RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 NPIPA7E9PJI5 369 aa17.13■□□□□ 0.33
SFSWAP-203ENST00000535236 RAD1O60671 282 aa17.13■□□□□ 0.33
SFSWAP-203ENST00000535236 IFNA4P05014 189 aa17.13■□□□□ 0.33
SFSWAP-203ENST00000535236 NPIPA8P0DM63 369 aa17.13■□□□□ 0.33
SFSWAP-203ENST00000535236 ABOP16442 354 aa17.13■□□□□ 0.33
SFSWAP-203ENST00000535236 SELENOWP63302 87 aa17.13■□□□□ 0.33
SFSWAP-203ENST00000535236 EEF1A2Q05639 463 aaKnown RBP17.13■□□□□ 0.33
SFSWAP-203ENST00000535236 NEIL2Q969S2 332 aa17.13■□□□□ 0.33
SFSWAP-203ENST00000535236 TMEM100Q9NV29 134 aa17.13■□□□□ 0.33
SFSWAP-203ENST00000535236 PIK3C2AO00443 1686 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 SHPRHQ149N8 1683 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 NOTOA8MTQ0 251 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 MITFO75030 526 aaPredicted RBP17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 PRSS3P35030 304 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 DEFB103AP81534 67 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 CDKN3Q16667 212 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 HTR3DQ70Z44 454 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 AMIGO3Q86WK7 504 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 HAVCR2Q8TDQ0 301 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 DYNLRB1Q9NP97 96 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 FAM230AA0A1W2PPH8 454 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 DCDC2BA2VCK2 349 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 C12orf71A8MTZ7 269 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 CENPBD1B2RD01 187 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 IFNA10P01566 189 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 CD38P28907 300 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 IDUAP35475 653 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 ADARB1P78563 741 aaKnown RBP17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 GTDC1Q4AE62 458 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 PPP1R3BQ86XI6 285 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 METTL25Q8N6Q8 603 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 NXF5Q9H1B4 397 aaKnown RBP17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 LRIT1Q9P2V4 623 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 CAMK2AQ9UQM7 478 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 NSG1A0A0A6YYJ2 146 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 SGSHP51688 502 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 LUMP51884 338 aaPredicted RBP17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 CNN3Q15417 329 aaKnown RBP17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 OR9Q2Q8NGE9 314 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 CDS1Q92903 461 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 APMAPQ9HDC9 416 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 POT1Q9NUX5 634 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 ZCWPW2A0A1B0GU75 182 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 CASC3O15234 703 aaKnown RBP17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 HSD17B7P56937 341 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 SLC22A10Q63ZE4 541 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 ZNF765Q7L2R6 523 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 KDM1BQ8NB78 822 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 GPR148Q8TDV2 347 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 RTP3Q9BQQ7 232 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 PISDQ9UG56 409 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 POLHQ9Y253 713 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 ANKRD26Q9UPS8 1709 aa17.12■□□□□ 0.33
SFSWAP-203ENST00000535236 SERPINE2P07093 398 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 NKPD1Q17RQ9 610 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 OR1S1Q8NH92 325 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 SPIN2AQ99865 258 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 SPIN2BQ9BPZ2 258 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 INIPQ9NRY2 104 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 SMOXQ9NWM0 555 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 USP36Q9P275 1121 aaKnown RBP17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 CPNE7Q9UBL6 633 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 ATPIF1Q9UII2 106 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 A0A0U1RQS6 177 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 FOXE1O00358 373 aaPredicted RBP17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 GOSR2O14653 212 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 HOXC13P31276 330 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 PCGF2P35227 344 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 RPP30P78346 268 aaKnown RBP17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 ARHGAP19Q14CB8 494 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 ZNF423Q2M1K9 1284 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 SDR9C7Q8NEX9 313 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 MDGA1Q8NFP4 955 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 SORBS1Q9BX66 1292 aaKnown RBP17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 FOLH1BQ9HBA9 442 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 KCPQ6ZWJ8 1503 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 LCKP06239 509 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 FBXO45P0C2W1 286 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 GSCP56915 257 aaPredicted RBP17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 PCGF3Q3KNV8 242 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 TMEM130Q8N3G9 435 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 OR5L1Q8NGL2 311 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 OR5W2Q8NH69 310 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 SSX3Q99909 188 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 ST6GALNAC5Q9BVH7 336 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 RHBDD3Q9Y3P4 386 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 LSM5Q9Y4Y9 91 aaKnown RBP17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 AP1M2Q9Y6Q5 423 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 CAV2P51636 162 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 RTL10Q7L3V2 364 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 PRSS48Q7RTY5 328 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 KIAA0907Q7Z7F0 614 aaPredicted RBP17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 ANKLE1Q8NAG6 615 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 OR5D16Q8NGK9 328 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 PTERQ96BW5 349 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 RDH14Q9HBH5 336 aa17.11■□□□□ 0.33
SFSWAP-203ENST00000535236 BLACEA4D250 179 aa17.1■□□□□ 0.33
SFSWAP-203ENST00000535236 CNMDO75829 334 aa17.1■□□□□ 0.33
SFSWAP-203ENST00000535236 GLSO94925 669 aaPredicted RBP17.1■□□□□ 0.33
SFSWAP-203ENST00000535236 MSL3P1P0C860 447 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms