RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 AK1P00568 194 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 CHMP24386 653 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 DPP4P27487 766 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 ATP12AP54707 1039 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 CASP9P55211 416 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 FUT5Q11128 374 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 ART3Q13508 389 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 CD226Q15762 336 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 CGB2Q6NT52 195 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 ZNF585AQ6P3V2 769 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 XKRXQ6PP77 449 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 SEM1Q6ZVN7 128 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 ADGRE4PQ86SQ3 457 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 EID3Q8N140 333 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 ARFGAP2Q8N6H7 521 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 OR14L1PQ8NHC6 308 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 ZFP90Q8TF47 636 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 ABTB1Q969K4 478 aaPredicted RBP11.77□□□□□ -0.53
VPS28-216ENST00000533806 C1GALT1C1Q96EU7 318 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 SLC35G5Q96KT7 338 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 KLHDC3Q9BQ90 382 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 SIKE1Q9BRV8 207 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 NMUR2Q9GZQ4 415 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 ZNF350Q9GZX5 532 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 HOXD1Q9GZZ0 328 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 SAP130Q9H0E3 1048 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 EXO5Q9H790 373 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 CRYBG3Q68DQ2 2970 aa11.77□□□□□ -0.53
VPS28-216ENST00000533806 NCOA6Q14686 2063 aaPredicted RBP11.77□□□□□ -0.53
VPS28-216ENST00000533806 A1L4Q6 167 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 AHRRA9YTQ3 701 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 HMGN4O00479 90 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 RFXANKO14593 260 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 NDUFB5O43674 189 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 AGR2O95994 175 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 GSNP06396 782 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 OR12D1P0DN82 309 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 GLI4P10075 376 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 GABRA1P14867 456 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 MSX1P28360 303 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 PTGER4P35408 488 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 DCTP40126 519 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 MAGEA8P43361 318 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 LHX2P50458 406 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 NUP107P57740 925 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 TXNL4AP83876 142 aaKnown RBP11.76□□□□□ -0.53
VPS28-216ENST00000533806 PMPCAQ10713 525 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 STX5Q13190 355 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 GANABQ14697 944 aaKnown RBP11.76□□□□□ -0.53
VPS28-216ENST00000533806 TOMM20Q15388 145 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 ZNF141Q15928 474 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 GLYR1Q49A26 553 aaPredicted RBP11.76□□□□□ -0.53
VPS28-216ENST00000533806 FLYWCH1Q4VC44 716 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 TIGD2Q4W5G0 525 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 TMEM211Q6ICI0 200 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 TNFAIP8L2Q6P589 184 aaPredicted RBP11.76□□□□□ -0.53
VPS28-216ENST00000533806 ZNF621Q6ZSS3 439 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 MTERF4Q7Z6M4 381 aaKnown RBP11.76□□□□□ -0.53
VPS28-216ENST00000533806 MISPQ8IVT2 679 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 PM20D2Q8IYS1 436 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 TRIML2Q8N7C3 387 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 OR4K17Q8NGC6 315 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 RAB8BQ92930 207 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 THOC1Q96FV9 657 aaKnown RBP11.76□□□□□ -0.53
VPS28-216ENST00000533806 CHMP6Q96FZ7 201 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 PAIP1Q9H074 479 aaKnown RBP11.76□□□□□ -0.53
VPS28-216ENST00000533806 HHATLQ9HCP6 504 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 NPHS2Q9NP85 383 aa11.76□□□□□ -0.53
VPS28-216ENST00000533806 KLF2Q9Y5W3 355 aaPredicted RBP11.76□□□□□ -0.53
VPS28-216ENST00000533806 PCNX1Q96RV3 2341 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 CENPVL1A0A0U1RR11 272 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 C7orf72A4D263 438 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 KDM4EB2RXH2 506 aaPredicted RBP11.75□□□□□ -0.53
VPS28-216ENST00000533806 SCDO00767 359 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 OIP5O43482 229 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 DNAJA2O60884 412 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 STX11O75558 287 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 UGT2B17O75795 530 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 TOXO94900 526 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 EPPINO95925 133 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 CAPN3P20807 821 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 ATP6V1C1P21283 382 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 SMSP52788 366 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 CLDN15P56746 228 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 CLDN18P56856 261 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 GUCY1A3Q02108 690 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 MAPK11Q15759 364 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 BCL2A1Q16548 175 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 GTDC1Q4AE62 458 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 ACSF3Q4G176 576 aaPredicted RBP11.75□□□□□ -0.53
VPS28-216ENST00000533806 HSP90B2PQ58FF3 399 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 COX20Q5RI15 118 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 C1orf185Q5T7R7 199 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 METTL21CQ5VZV1 264 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 ARSKQ6UWY0 536 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 B3GNT6Q6ZMB0 384 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 OLIG3Q7RTU3 272 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 IFNEQ86WN2 208 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 RNF130Q86XS8 419 aa11.75□□□□□ -0.53
VPS28-216ENST00000533806 ZPLD1Q8TCW7 415 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms