RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 FGFR1OP2Q9NVK5 253 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 TMEM45AQ9NWC5 275 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 TNFRSF10DQ9UBN6 386 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 DKKL1Q9UK85 242 aa13.68□□□□□ -0.22
CPSF1-208ENST00000532560 FREM3P0C091 2139 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 USP9YO00507 2555 aaPredicted RBP13.67□□□□□ -0.22
CPSF1-208ENST00000532560 A0A1W2PQD3 144 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 CCDC154A6NI56 674 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 C17orf51A8MQB3 221 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 RFXANKO14593 260 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 WDR1O75083 606 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 AGR2O95994 175 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 ACVR2AP27037 513 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 GCKP35557 465 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 DSCR4P56555 118 aaPredicted RBP13.67□□□□□ -0.22
CPSF1-208ENST00000532560 C17orf67Q0P5P2 114 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 FBXW10Q5XX13 1052 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 VASNQ6EMK4 673 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 YRDCQ86U90 279 aaKnown RBP13.67□□□□□ -0.22
CPSF1-208ENST00000532560 MISPQ8IVT2 679 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 ZNF808Q8N4W9 903 aaPredicted RBP13.67□□□□□ -0.22
CPSF1-208ENST00000532560 OR2M3Q8NG83 312 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 OR5M9Q8NGP3 310 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 OR14L1PQ8NHC6 308 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 ITLN2Q8WWU7 325 aaPredicted RBP13.67□□□□□ -0.22
CPSF1-208ENST00000532560 TACO1Q9BSH4 297 aaKnown RBP13.67□□□□□ -0.22
CPSF1-208ENST00000532560 HOXD1Q9GZZ0 328 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 OR51I1Q9H343 314 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 NPHS2Q9NP85 383 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 EXD2Q9NVH0 621 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 SLC6A5Q9Y345 797 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 HECTD1Q9ULT8 2610 aa13.67□□□□□ -0.22
CPSF1-208ENST00000532560 SPTAN1Q13813 2472 aaKnown RBP13.67□□□□□ -0.22
CPSF1-208ENST00000532560 COL12A1Q99715 3063 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 NPIPB9F8W1W9 429 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 SCDO00767 359 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 NDUFB5O43674 189 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 HNRNPCL1O60812 293 aaKnown RBP13.66□□□□□ -0.22
CPSF1-208ENST00000532560 DCTN3O75935 186 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 ACTL6AO96019 429 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 HOXD4P09016 255 aaPredicted RBP13.66□□□□□ -0.22
CPSF1-208ENST00000532560 ZCCHC18P0CG32 403 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 GABRA1P14867 456 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 HPGDP15428 266 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 AGAP20933 346 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 DPP4P27487 766 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 PTGER4P35408 488 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 DCTP40126 519 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 SMSP52788 366 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 SQLEQ14534 574 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 SNCBQ16143 134 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 ARHGAP11BQ3KRB8 267 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 ATAD3BQ5T9A4 648 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 TMEM211Q6ICI0 200 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 HEPHL1Q6MZM0 1159 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 ZNF585AQ6P3V2 769 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 TNFAIP8L2Q6P589 184 aaPredicted RBP13.66□□□□□ -0.22
CPSF1-208ENST00000532560 DNAJC14Q6Y2X3 702 aaPredicted RBP13.66□□□□□ -0.22
CPSF1-208ENST00000532560 ZNF621Q6ZSS3 439 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 NCCRP1Q6ZVX7 275 aaPredicted RBP13.66□□□□□ -0.22
CPSF1-208ENST00000532560 IFNEQ86WN2 208 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 MARVELD2Q8N4S9 558 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 ZNF527Q8NB42 609 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 RFWD2Q8NHY2 731 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 DUSP19Q8WTR2 217 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 VPS33AQ96AX1 596 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 C1GALT1C1Q96EU7 318 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 THOC1Q96FV9 657 aaKnown RBP13.66□□□□□ -0.22
CPSF1-208ENST00000532560 ITCHQ96J02 903 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 SDF2Q99470 211 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 TIMP4Q99727 224 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 UGT2B28Q9BY64 529 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 NMUR2Q9GZQ4 415 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 PRDM14Q9GZV8 571 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 ZNF350Q9GZX5 532 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 DSN1Q9H410 356 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 PTGES2Q9H7Z7 377 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 TAS2R10Q9NYW0 307 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 MED11Q9P086 117 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 DCTN4Q9UJW0 460 aa13.66□□□□□ -0.22
CPSF1-208ENST00000532560 SPTBN1Q01082 2364 aaKnown RBP13.66□□□□□ -0.22
CPSF1-208ENST00000532560 ICE1Q9Y2F5 2266 aa13.65□□□□□ -0.22
CPSF1-208ENST00000532560 MGRN1O60291 552 aa13.65□□□□□ -0.22
CPSF1-208ENST00000532560 ZIC3O60481 467 aa13.65□□□□□ -0.22
CPSF1-208ENST00000532560 STX11O75558 287 aa13.65□□□□□ -0.22
CPSF1-208ENST00000532560 CLDN1O95832 211 aa13.65□□□□□ -0.22
CPSF1-208ENST00000532560 GUSBP08236 651 aa13.65□□□□□ -0.22
CPSF1-208ENST00000532560 OR12D1P0DN82 309 aa13.65□□□□□ -0.22
CPSF1-208ENST00000532560 TROVE2P10155 538 aaKnown RBP eCLIP13.65□□□□□ -0.22
CPSF1-208ENST00000532560 BMP7P18075 431 aa13.65□□□□□ -0.22
CPSF1-208ENST00000532560 MAGEA8P43361 318 aa13.65□□□□□ -0.22
CPSF1-208ENST00000532560 ANXA11P50995 505 aaKnown RBP13.65□□□□□ -0.22
CPSF1-208ENST00000532560 CASP9P55211 416 aa13.65□□□□□ -0.22
CPSF1-208ENST00000532560 GFRA1P56159 465 aa13.65□□□□□ -0.22
CPSF1-208ENST00000532560 BNIP1Q12981 228 aa13.65□□□□□ -0.22
CPSF1-208ENST00000532560 FLYWCH1Q4VC44 716 aa13.65□□□□□ -0.22
CPSF1-208ENST00000532560 KLHL26Q53HC5 615 aa13.65□□□□□ -0.22
CPSF1-208ENST00000532560 DCST1Q5T197 706 aa13.65□□□□□ -0.22
CPSF1-208ENST00000532560 RTL6Q6ICC9 239 aa13.65□□□□□ -0.22
CPSF1-208ENST00000532560 XKRXQ6PP77 449 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms