RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 NLKQ9UBE8 527 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 A0A1W2PP55 124 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 ZGLP1P0C6A0 271 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 PRKAR1AP10644 381 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 CFL1P23528 166 aaKnown RBP17.95■□□□□ 0.46
VPS28-213ENST00000530983 TEAD1P28347 426 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 CTBP2P56545 445 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 CLDN2P57739 230 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 EFR3AQ14156 821 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 TRILQ7L0X0 811 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 OR51G2Q8NGK0 314 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 GON7Q9BXV9 100 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 UBQLN3Q9H347 655 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 DPP7Q9UHL4 492 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 UNC80Q8N2C7 3258 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 DNAH14Q0VDD8 3507 aa17.95■□□□□ 0.46
VPS28-213ENST00000530983 CENPVL1A0A0U1RR11 272 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 LOC105371267A0A1B0GV96 52 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 GSAPA4D1B5 854 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 OR6C70A6NIJ9 312 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 NARSO43776 548 aaKnown RBP17.94■□□□□ 0.46
VPS28-213ENST00000530983 POU2F2P09086 479 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 STXBP1P61764 594 aaKnown RBP17.94■□□□□ 0.46
VPS28-213ENST00000530983 RPE65Q16518 533 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 C2orf27AQ580R0 203 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 MZT2AQ6P582 158 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 ZNF836Q6ZNA1 936 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 CXXC5Q7LFL8 322 aaKnown RBP17.94■□□□□ 0.46
VPS28-213ENST00000530983 LIX1LQ8IVB5 337 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 ELMOD2Q8IZ81 293 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 HDDC3Q8N4P3 179 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 YIPF7Q8N8F6 280 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 OTULINQ96BN8 352 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 FCRL4Q96PJ5 515 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 TIMP4Q99727 224 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 TRIM45Q9H8W5 580 aaPredicted RBP17.94■□□□□ 0.46
VPS28-213ENST00000530983 MOSPD1Q9UJG1 213 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 KLHL21Q9UJP4 597 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 SIRT4Q9Y6E7 314 aaPredicted RBP17.94■□□□□ 0.46
VPS28-213ENST00000530983 DUXAA6NLW8 204 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 ZNF780AO75290 641 aaPredicted RBP17.94■□□□□ 0.46
VPS28-213ENST00000530983 HMGN1P05114 100 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 CMPK1P30085 196 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 SIX5Q8N196 739 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 ZFAND1Q8TCF1 268 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 ZFPM2Q8WW38 1151 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 MS4A4EQ96PG1 132 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 RSPH9Q9H1X1 276 aaPredicted RBP17.94■□□□□ 0.46
VPS28-213ENST00000530983 LYARQ9NX58 379 aaKnown RBP17.94■□□□□ 0.46
VPS28-213ENST00000530983 H2AFY2Q9P0M6 372 aaPredicted RBP17.94■□□□□ 0.46
VPS28-213ENST00000530983 SLC17A4Q9Y2C5 497 aa17.94■□□□□ 0.46
VPS28-213ENST00000530983 FAM240BA0A1B0GVZ2 78 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 ZC3H12DA2A288 527 aaKnown RBP17.93■□□□□ 0.46
VPS28-213ENST00000530983 PRR23AA6NEV1 266 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 ZSCAN5BA6NJL1 495 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 SGK494L7N484 410 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 GTPBP1O00178 669 aaKnown RBP17.93■□□□□ 0.46
VPS28-213ENST00000530983 RNF13O43567 381 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 RNGTTO60942 597 aaKnown RBP17.93■□□□□ 0.46
VPS28-213ENST00000530983 KAT7O95251 611 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 GALP22466 123 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 ZNF136P52737 540 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 CLDN20P56880 219 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 FXYD6P3P58550 94 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 FAPQ12884 760 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 TJAP1Q5JTD0 557 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 WDR45BQ5MNZ6 344 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 CDC73Q6P1J9 531 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 PLBD1Q6P4A8 553 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 SYCE2Q6PIF2 218 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 VN1R4Q7Z5H5 301 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 TTC9Q92623 222 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 FGF13Q92913 245 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 SNAPC3Q92966 411 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 COL26A1Q96A83 441 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 MTHFD2LQ9H903 347 aaPredicted RBP17.93■□□□□ 0.46
VPS28-213ENST00000530983 NTMQ9P121 344 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 WDR45Q9Y484 360 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 STON1Q9Y6Q2 735 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 C12orf71A8MTZ7 269 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 ELK1P19419 428 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 FUT1P19526 365 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 DBPQ10586 325 aaPredicted RBP17.93■□□□□ 0.46
VPS28-213ENST00000530983 SF3A2Q15428 464 aaKnown RBP17.93■□□□□ 0.46
VPS28-213ENST00000530983 SMARCD3Q6STE5 483 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 TOR1AIP2Q8NFQ8 470 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 PRSS27Q9BQR3 290 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 MARVELD1Q9BSK0 173 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 MED20Q9H944 212 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 RWDD3Q9Y3V2 267 aa17.93■□□□□ 0.46
VPS28-213ENST00000530983 SCN2AQ99250 2005 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 LOC102723532A0A0G2JNH3 316 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 ISM1B1AKI9 464 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 SLC19A2O60779 497 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 ZNF888P0CJ79 500 aaPredicted RBP17.92■□□□□ 0.46
VPS28-213ENST00000530983 GJA4P35212 333 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 OR3A3P47888 321 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 SOX9P48436 509 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 HTRA3P83110 453 aa17.92■□□□□ 0.46
VPS28-213ENST00000530983 BDH1Q02338 343 aa17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms