RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 DEFB126Q9BYW3 111 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 FOLH1BQ9HBA9 442 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 BCL2L10Q9HD36 194 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 A4GALTQ9NPC4 353 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 CALML5Q9NZT1 146 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 ACTR3BQ9P1U1 418 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 IL17BQ9UHF5 180 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 DUSP13Q9UII6 198 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 PRDM4Q9UKN5 801 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 POMPQ9Y244 141 aa6.83□□□□□ -1.32
CD44-228ENST00000528455 PIEZO2Q9H5I5 2752 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 FRG2CA6NGY1 282 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 TMEM200CA6NKL6 621 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 ZNF891A8MT65 544 aaPredicted RBP6.82□□□□□ -1.32
CD44-228ENST00000528455 ACOT8O14734 319 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 GSTA4O15217 222 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 STX11O75558 287 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 SERPINB7O75635 380 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 KCNK2O95069 426 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 PGM3O95394 542 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 STAMBPO95630 424 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 IFNA14P01570 189 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 NR2F1P10589 423 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 ACP2P11117 423 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 ETS2P15036 469 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 HOXB6P17509 224 aaKnown RBP6.82□□□□□ -1.32
CD44-228ENST00000528455 GGT1P19440 569 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 TRHRP34981 398 aaPredicted RBP6.82□□□□□ -1.32
CD44-228ENST00000528455 PIGAP37287 484 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 CRISP3P54108 245 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 PNLIPRP2P54317 469 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 PSMD4P55036 377 aaKnown RBP6.82□□□□□ -1.32
CD44-228ENST00000528455 POU6F2P78424 691 aaPredicted RBP6.82□□□□□ -1.32
CD44-228ENST00000528455 CDK6Q00534 326 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 MS4A2Q01362 244 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 AIMP2Q13155 320 aaKnown RBP6.82□□□□□ -1.32
CD44-228ENST00000528455 EBPQ15125 230 aaKnown RBP6.82□□□□□ -1.32
CD44-228ENST00000528455 DUSP5Q16690 384 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 DECR1Q16698 335 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 CRB2Q5IJ48 1285 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 DCAF10Q5QP82 559 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 GCNT6Q5T4J0 391 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 TNFAIP8L2Q6P589 184 aaPredicted RBP6.82□□□□□ -1.32
CD44-228ENST00000528455 SZRD1Q7Z422 152 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 MRGPREQ86SM8 312 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 PATL1Q86TB9 770 aaKnown RBP6.82□□□□□ -1.32
CD44-228ENST00000528455 IFNEQ86WN2 208 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 SLC44A2Q8IWA5 706 aaPredicted RBP6.82□□□□□ -1.32
CD44-228ENST00000528455 KBTBD2Q8IY47 623 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 ZZZ3Q8IYH5 903 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 TAGAPQ8N103 731 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 C10orf111Q8N326 155 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 KIF2BQ8N4N8 673 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 RNF148Q8N7C7 305 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 ZNF321PQ8N8H1 164 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 ZNF441Q8N8Z8 693 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 HIPK4Q8NE63 616 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 DOK4Q8TEW6 326 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 OIT3Q8WWZ8 545 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 RAB8BQ92930 207 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 CLPTM1LQ96KA5 538 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 ZNF607Q96SK3 696 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 MESP1Q9BRJ9 268 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 YIPF4Q9BSR8 244 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 TRIM8Q9BZR9 551 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 WWTR1Q9GZV5 400 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 HOXD1Q9GZZ0 328 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 SERHL2Q9H4I8 314 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 PIF1Q9H611 641 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 Q9N2J8 555 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 EQTNQ9NQ60 294 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 MYOTQ9UBF9 498 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 P2RX2Q9UBL9 471 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 SLC7A8Q9UHI5 535 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 ZNF223Q9UK11 482 aaPredicted RBP6.82□□□□□ -1.32
CD44-228ENST00000528455 CBLCQ9ULV8 474 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 YARS2Q9Y2Z4 477 aaKnown RBP6.82□□□□□ -1.32
CD44-228ENST00000528455 KCNE3Q9Y6H6 103 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 DOCK10Q96BY6 2186 aa6.82□□□□□ -1.32
CD44-228ENST00000528455 BAHCC1Q9P281 2608 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 CFAP46Q8IYW2 2715 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 TRBV11-1A0A0K0K1C0 115 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 ANKRD34BA5PLL1 514 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 AQP12BA6NM10 295 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 A8MVJ9 347 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 C5orf58C9J3I9 102 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 M0QX08 132 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 CXCR6O00574 342 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 NKX2-8O15522 239 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 FCMRO60667 390 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 GCM2O75603 506 aaPredicted RBP6.81□□□□□ -1.32
CD44-228ENST00000528455 PDE9AO76083 593 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 IL33O95760 270 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 PRB1P04280 392 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 UMPSP11172 480 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 TCN1P20061 433 aaPredicted RBP6.81□□□□□ -1.32
CD44-228ENST00000528455 PCGF2P35227 344 aa6.81□□□□□ -1.32
CD44-228ENST00000528455 MSX2P35548 267 aaPredicted RBP6.81□□□□□ -1.32
CD44-228ENST00000528455 NR0B1P51843 470 aaKnown RBP6.81□□□□□ -1.32
CD44-228ENST00000528455 CASP9P55211 416 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms