RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 OR2I1PQ8NGU4 316 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 GGHQ92820 318 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 ITPAQ9BY32 194 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 ARMC7Q9H6L4 198 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 PRODH2Q9UF12 536 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 ADAMTS9Q9P2N4 1935 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 CLCA1A8K7I4 914 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 INMTO95050 263 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 ACVR2AP27037 513 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 MAP2K4P45985 399 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 RFX3P48380 749 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 RNF144AP50876 292 aaPredicted RBP19.16■□□□□ 0.66
VPS28-209ENST00000528142 LSAMPQ13449 338 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 ZNF141Q15928 474 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 PDZK1Q5T2W1 519 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 PTCHD4Q6ZW05 846 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 CEP76Q8TAP6 659 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 C12orf43Q96C57 262 aaKnown RBP19.16■□□□□ 0.66
VPS28-209ENST00000528142 NAA50Q9GZZ1 169 aaKnown RBP19.16■□□□□ 0.66
VPS28-209ENST00000528142 LRRN3Q9H3W5 708 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 EVA1AQ9H8M9 152 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 PNO1Q9NRX1 252 aaKnown RBP19.16■□□□□ 0.66
VPS28-209ENST00000528142 SLC7A7Q9UM01 511 aa19.16■□□□□ 0.66
VPS28-209ENST00000528142 MYO15AQ9UKN7 3530 aa19.15■□□□□ 0.66
VPS28-209ENST00000528142 TRAPPC13A5PLN9 417 aa19.15■□□□□ 0.66
VPS28-209ENST00000528142 LYPD3O95274 346 aa19.15■□□□□ 0.66
VPS28-209ENST00000528142 GP2P55259 537 aaKnown RBP19.15■□□□□ 0.66
VPS28-209ENST00000528142 SNRPGP62308 76 aaKnown RBP19.15■□□□□ 0.66
VPS28-209ENST00000528142 TSPAN31Q12999 210 aa19.15■□□□□ 0.66
VPS28-209ENST00000528142 ZNF528Q3MIS6 628 aa19.15■□□□□ 0.66
VPS28-209ENST00000528142 MINDY4Q4G0A6 757 aa19.15■□□□□ 0.66
VPS28-209ENST00000528142 VWA2Q5GFL6 755 aa19.15■□□□□ 0.66
VPS28-209ENST00000528142 C1orf189Q5VU69 101 aa19.15■□□□□ 0.66
VPS28-209ENST00000528142 MBOAT2Q6ZWT7 520 aa19.15■□□□□ 0.66
VPS28-209ENST00000528142 KIF18BQ86Y91 864 aa19.15■□□□□ 0.66
VPS28-209ENST00000528142 GRAMD2AQ8IUY3 354 aa19.15■□□□□ 0.66
VPS28-209ENST00000528142 TMEM151BQ8IW70 566 aa19.15■□□□□ 0.66
VPS28-209ENST00000528142 TMEM255BQ8WV15 326 aa19.15■□□□□ 0.66
VPS28-209ENST00000528142 NAT6Q93015 286 aa19.15■□□□□ 0.66
VPS28-209ENST00000528142 PRSS27Q9BQR3 290 aa19.15■□□□□ 0.66
VPS28-209ENST00000528142 G6PC3Q9BUM1 346 aa19.15■□□□□ 0.66
VPS28-209ENST00000528142 AMBNQ9NP70 447 aa19.15■□□□□ 0.66
VPS28-209ENST00000528142 CBLCQ9ULV8 474 aa19.15■□□□□ 0.66
VPS28-209ENST00000528142 IGHV5-10-1A0A0J9YXX1 117 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 TCRBV16S1A1N1A0A5B0 115 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 SH3D21A4FU49 640 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 ZNF99A8MXY4 864 aaPredicted RBP19.14■□□□□ 0.65
VPS28-209ENST00000528142 KLF4O43474 513 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 NUDT6P53370 316 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 SLC37A1P57057 533 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 CDK5Q00535 292 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 ACY1Q03154 408 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 OR1Q1Q15612 314 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 LPAL2Q16609 132 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 MFSD4BQ5TF39 518 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 ARHGAP40Q5TG30 622 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 MEX3DQ86XN8 651 aaKnown RBP19.14■□□□□ 0.65
VPS28-209ENST00000528142 BCORP1Q8N888 145 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 ZNF321PQ8N8H1 164 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 PIGXQ8TBF5 258 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 CNOT9Q92600 299 aaKnown RBP19.14■□□□□ 0.65
VPS28-209ENST00000528142 COPS4Q9BT78 406 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 LIN28AQ9H9Z2 209 aaKnown RBP19.14■□□□□ 0.65
VPS28-209ENST00000528142 TESQ9UGI8 421 aaKnown RBP19.14■□□□□ 0.65
VPS28-209ENST00000528142 RP1P56715 2156 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 AHCYL1O43865 530 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 TRMUO75648 421 aaKnown RBP19.14■□□□□ 0.65
VPS28-209ENST00000528142 IGKV3-11P04433 115 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 PEX19P40855 299 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 GIPRP48546 466 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 MVKQ03426 396 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 NNATQ16517 81 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 RHBDD2Q6NTF9 364 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 RRM2BQ7LG56 351 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 RABEPKQ7Z6M1 372 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 GALNT15Q8N3T1 639 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 SVOPQ8N4V2 548 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 C7orf57Q8NEG2 295 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 TRUB1Q8WWH5 349 aaKnown RBP19.14■□□□□ 0.65
VPS28-209ENST00000528142 FAM46AQ96IP4 442 aaKnown RBP19.14■□□□□ 0.65
VPS28-209ENST00000528142 ACOT13Q9NPJ3 140 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 SLC22A11Q9NSA0 550 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 SRPK3Q9UPE1 567 aa19.14■□□□□ 0.65
VPS28-209ENST00000528142 ADAMTS20P59510 1910 aa19.13■□□□□ 0.65
VPS28-209ENST00000528142 UNC13CQ8NB66 2214 aa19.13■□□□□ 0.65
VPS28-209ENST00000528142 TRIM64BA6NI03 449 aa19.13■□□□□ 0.65
VPS28-209ENST00000528142 A8MUA0 341 aa19.13■□□□□ 0.65
VPS28-209ENST00000528142 DDAH2O95865 285 aa19.13■□□□□ 0.65
VPS28-209ENST00000528142 FPR3P25089 353 aa19.13■□□□□ 0.65
VPS28-209ENST00000528142 TMBIM6P55061 237 aa19.13■□□□□ 0.65
VPS28-209ENST00000528142 CPEB4Q17RY0 729 aaKnown RBP eCLIP19.13■□□□□ 0.65
VPS28-209ENST00000528142 TRIM61Q5EBN2 209 aa19.13■□□□□ 0.65
VPS28-209ENST00000528142 TMEM201Q5SNT2 666 aa19.13■□□□□ 0.65
VPS28-209ENST00000528142 SLC23A3Q6PIS1 610 aa19.13■□□□□ 0.65
VPS28-209ENST00000528142 RASSF6Q6ZTQ3 369 aa19.13■□□□□ 0.65
VPS28-209ENST00000528142 ERI1Q8IV48 349 aaKnown RBP19.13■□□□□ 0.65
VPS28-209ENST00000528142 NRMQ8IXM6 262 aa19.13■□□□□ 0.65
VPS28-209ENST00000528142 MYDGFQ969H8 173 aa19.13■□□□□ 0.65
VPS28-209ENST00000528142 MPP4Q96JB8 637 aa19.13■□□□□ 0.65
VPS28-209ENST00000528142 PLA2G12AQ9BZM1 189 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms