RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 OR13C2Q8NGS9 318 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 PELI1Q96FA3 418 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 C12orf66Q96MD2 445 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 NAP1L5Q96NT1 182 aaPredicted RBP5.86□□□□□ -1.47
NUP54-215ENST00000514313 CAPS2Q9BXY5 557 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 DUSP16Q9BY84 665 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 PRODH2Q9UF12 536 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 STYXL1Q9Y6J8 313 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 SLCO1B1Q9Y6L6 691 aa5.86□□□□□ -1.47
NUP54-215ENST00000514313 ZNF208O43345 1280 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 HBQ1P09105 142 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 ALPIP09923 528 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 IDSP22304 550 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 LAP3P28838 519 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 GNPDA1P46926 289 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 SULT1E1P49888 294 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 MAP2K1Q02750 393 aaPredicted RBP5.85□□□□□ -1.47
NUP54-215ENST00000514313 ELAVL3Q14576 367 aaKnown RBP5.85□□□□□ -1.47
NUP54-215ENST00000514313 ZMYND11Q15326 602 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 GLIPR1L2Q4G1C9 344 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 OR8G2PQ6IF36 304 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 PAQR6Q6TCH4 344 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 ERICH1Q86X53 443 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 VSTM4Q8IW00 320 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 SLC22A18ASQ8N1D0 253 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 OR5L2Q8NGL0 311 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 PIGCQ92535 297 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 CNDP1Q96KN2 507 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 C9orf85Q96MD7 179 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 TGM7Q96PF1 710 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 NPAS2Q99743 824 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 SLC6A7Q99884 636 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 GCOM2Q9BZD3 368 aaPredicted RBP5.85□□□□□ -1.47
NUP54-215ENST00000514313 UFSP2Q9NUQ7 469 aa5.85□□□□□ -1.47
NUP54-215ENST00000514313 TPST2O60704 377 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 TRIM3O75382 744 aaPredicted RBP5.84□□□□□ -1.47
NUP54-215ENST00000514313 CA1P00915 261 aaPredicted RBP5.84□□□□□ -1.47
NUP54-215ENST00000514313 SERPINB2P05120 415 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 ACVR1BP36896 505 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 OR1D4P47884 311 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 CSTF1Q05048 431 aaKnown RBP5.84□□□□□ -1.47
NUP54-215ENST00000514313 DDX39BQ13838 428 aaKnown RBP5.84□□□□□ -1.47
NUP54-215ENST00000514313 CRMP1Q14194 572 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 SLC5A12Q1EHB4 618 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 EXOC3L2Q2M3D2 409 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 ZNF57Q68EA5 555 aaPredicted RBP5.84□□□□□ -1.47
NUP54-215ENST00000514313 FAM71F2Q6NXP2 309 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 FAAP20Q6NZ36 180 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 ZNF343Q6P1L6 599 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 GPRIN3Q6ZVF9 776 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 SLC47A2Q86VL8 602 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 CSNK1G2-AS1Q8NCQ2 148 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 OR6T1Q8NGN1 323 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 ITLN1Q8WWA0 313 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 TM2D1Q9BX74 207 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 GNB4Q9HAV0 340 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 EXOSC3Q9NQT5 275 aaKnown RBP5.84□□□□□ -1.47
NUP54-215ENST00000514313 RPH3ALQ9UNE2 315 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 NAALAD2Q9Y3Q0 740 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 MAD1L1Q9Y6D9 718 aa5.84□□□□□ -1.47
NUP54-215ENST00000514313 SAGE2PA6NJ88 616 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 OR6C65A6NJZ3 312 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 G3V4G9 280 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 OR7A17O14581 309 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 LCMT2O60294 686 aaKnown RBP5.83□□□□□ -1.48
NUP54-215ENST00000514313 SRPX2O60687 465 aaPredicted RBP5.83□□□□□ -1.48
NUP54-215ENST00000514313 VENTXO95231 258 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 UMPSP11172 480 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 ARHGDIBP52566 201 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 KRTAP1-1Q07627 177 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 SLC10A1Q14973 349 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 LTB4RQ15722 352 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 CYP51A1Q16850 503 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 FAM120AOSQ5T036 256 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 DCST2Q5T1A1 773 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 OTUD3Q5T2D3 398 aaPredicted RBP5.83□□□□□ -1.48
NUP54-215ENST00000514313 PVRIGQ6DKI7 326 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 ZSCAN25Q6NSZ9 544 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 Q6ZTC4 211 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 C16orf62Q7Z3J2 963 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 BHLHE23Q8NDY6 225 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 OR2T33Q8NG76 320 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 ZNF689Q96CS4 500 aaPredicted RBP5.83□□□□□ -1.48
NUP54-215ENST00000514313 ZNF599Q96NL3 588 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 VGLL1Q99990 258 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 TCHPQ9BT92 498 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 TMEM43Q9BTV4 400 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 HCAR1Q9BXC0 346 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 ZBP1Q9H171 429 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 IKZF5Q9H5V7 419 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 PANK3Q9H999 370 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 TIGARQ9NQ88 270 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 SMOXQ9NWM0 555 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 ARMCX1Q9P291 453 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 PCSK1NQ9UHG2 260 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 LCMT1Q9UIC8 334 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 MOB4Q9Y3A3 225 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 ALG6Q9Y672 507 aa5.83□□□□□ -1.48
NUP54-215ENST00000514313 A0A0J9YWU9 116 aa5.82□□□□□ -1.48
NUP54-215ENST00000514313 A0A1W2PNV4 684 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms