RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 GCGRP47871 477 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 OR1D4P47884 311 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 CLDN6P56747 220 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 EXOSC7Q15024 291 aaKnown RBP11.3□□□□□ -0.6
HDAC6-230ENST00000488543 PHF19Q5T6S3 580 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 FRRS1Q6ZNA5 592 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 TSPYL5Q86VY4 417 aaPredicted RBP11.3□□□□□ -0.6
HDAC6-230ENST00000488543 ZNF501Q96CX3 271 aaPredicted RBP11.3□□□□□ -0.6
HDAC6-230ENST00000488543 VMP1Q96GC9 406 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 DACH2Q96NX9 599 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 GFM1Q96RP9 751 aaKnown RBP11.3□□□□□ -0.6
HDAC6-230ENST00000488543 EDEM2Q9BV94 578 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 SPATA5L1Q9BVQ7 753 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 PINK1Q9BXM7 581 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 ADAP2Q9NPF8 381 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 NECTIN3Q9NQS3 549 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 CELSR3Q9NYQ7 3312 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 ACAD8Q9UKU7 415 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 PAIP2BQ9ULR5 123 aaKnown RBP11.3□□□□□ -0.6
HDAC6-230ENST00000488543 FAM32AQ9Y421 112 aaKnown RBP11.3□□□□□ -0.6
HDAC6-230ENST00000488543 CHST2Q9Y4C5 530 aa11.3□□□□□ -0.6
HDAC6-230ENST00000488543 DUXAA6NLW8 204 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 C4orf47A7E2U8 309 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 A8MVJ9 347 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 AIREO43918 545 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 FCMRO60667 390 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 GADD45GO95257 159 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 LGI1O95970 557 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 PTHP01270 115 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 S1PR1P21453 382 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 RPS3AP61247 264 aaKnown RBP11.29□□□□□ -0.6
HDAC6-230ENST00000488543 SKP1P63208 163 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 GRM7Q14831 915 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 ATAD3BQ5T9A4 648 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 NCCRP1Q6ZVX7 275 aaPredicted RBP11.29□□□□□ -0.6
HDAC6-230ENST00000488543 PRSS48Q7RTY5 328 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 C16orf62Q7Z3J2 963 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 P3H2Q8IVL5 708 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 SLC9A6Q92581 669 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 GGHQ92820 318 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 HOXB13Q92826 284 aaPredicted RBP11.29□□□□□ -0.6
HDAC6-230ENST00000488543 Q96MT0 163 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 GABARAPL3Q9BY60 117 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 PIGUQ9H490 435 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 CALML5Q9NZT1 146 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 NDOR1Q9UHB4 597 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 OSGIN1Q9UJX0 560 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 FREM2Q5SZK8 3169 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 NUP210LQ5VU65 1888 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 ZNF292O60281 2723 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 FLRT2O43155 660 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 ZNF749O43361 778 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 CTNSO60931 367 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 TIAF1O95411 115 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 DUSP3P51452 185 aaPredicted RBP11.29□□□□□ -0.6
HDAC6-230ENST00000488543 NKX2-5P52952 324 aaPredicted RBP11.29□□□□□ -0.6
HDAC6-230ENST00000488543 NUBP1P53384 320 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 BTG2P78543 158 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 MAP4K2Q12851 820 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 TIGD6Q17RP2 521 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 ARHGAP11BQ3KRB8 267 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 C1orf189Q5VU69 101 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 PLEKHG7Q6ZR37 379 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 VRK2Q86Y07 508 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 ZNF595Q8IYB9 648 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 ADAMTS18Q8TE60 1221 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 OR6C1Q96RD1 312 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 SIGLEC11Q96RL6 698 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 PITX2Q99697 317 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 CHCHD6Q9BRQ6 235 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 FUZQ9BT04 418 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 CENPOQ9BU64 300 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 APMAPQ9HDC9 416 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 FBXO8Q9NRD0 319 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 PRTFDC1Q9NRG1 225 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 CUTCQ9NTM9 273 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 OCIAD1Q9NX40 245 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 QPCTLQ9NXS2 382 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 ZNF226Q9NYT6 803 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 FTSJ1Q9UET6 329 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 A4GNTQ9UNA3 340 aa11.29□□□□□ -0.6
HDAC6-230ENST00000488543 TRBV4-1A0A0J9YWV2 114 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 BLACEA4D250 179 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 H0YIG0 161 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 NTN3O00634 580 aaPredicted RBP11.28□□□□□ -0.6
HDAC6-230ENST00000488543 AGR2O95994 175 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 ALPPP05187 535 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 IGFBP1P08833 259 aaPredicted RBP11.28□□□□□ -0.6
HDAC6-230ENST00000488543 CBLP22681 906 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 AVPR1BP47901 424 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 MLIPQ5VWP3 458 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 TYW3Q6IPR3 259 aaKnown RBP11.28□□□□□ -0.6
HDAC6-230ENST00000488543 ZNF770Q6IQ21 691 aaPredicted RBP11.28□□□□□ -0.6
HDAC6-230ENST00000488543 KLHL17Q6TDP4 642 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 DEF8Q6ZN54 512 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 SLITRK4Q8IW52 837 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 SVOPQ8N4V2 548 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 SLC38A9Q8NBW4 561 aa11.28□□□□□ -0.6
HDAC6-230ENST00000488543 PHF10Q8WUB8 498 aaKnown RBP11.28□□□□□ -0.6
HDAC6-230ENST00000488543 HRASLS5Q96KN8 279 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms