RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 TNNI3P19429 210 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 CLK3P49761 638 aaKnown RBP13.12□□□□□ -0.31
CUX1-209ENST00000487284 IL1RL1Q01638 556 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 PIN1Q13526 163 aaPredicted RBP13.12□□□□□ -0.31
CUX1-209ENST00000487284 DGCR6Q14129 220 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 ELAVL1Q15717 326 aaKnown RBP13.12□□□□□ -0.31
CUX1-209ENST00000487284 MAPK14Q16539 360 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 CT45A2Q5DJT8 189 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 FGD3Q5JSP0 725 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 FIGNL1Q6PIW4 674 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 IGF2-ASQ6U949 168 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 NPSR1Q6W5P4 371 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 ZNF786Q8N393 782 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 CLIP4Q8N3C7 705 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 OR9Q2Q8NGE9 314 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 CT55Q8WUE5 264 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 YTHDF1Q9BYJ9 559 aaKnown RBP13.12□□□□□ -0.31
CUX1-209ENST00000487284 MRPS26Q9BYN8 205 aaKnown RBP13.12□□□□□ -0.31
CUX1-209ENST00000487284 NRSN2Q9GZP1 204 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 WDR54Q9H977 334 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 PAPOLBQ9NRJ5 636 aaKnown RBP13.12□□□□□ -0.31
CUX1-209ENST00000487284 MAN2C1Q9NTJ4 1040 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 PRODH2Q9UF12 536 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 TMCC3Q9ULS5 477 aa13.12□□□□□ -0.31
CUX1-209ENST00000487284 IDSB3KWA1 339 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 STMND1H3BQB6 276 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 RAD1O60671 282 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 KLF7O75840 302 aaPredicted RBP13.11□□□□□ -0.31
CUX1-209ENST00000487284 SEC24DO94855 1032 aaPredicted RBP13.11□□□□□ -0.31
CUX1-209ENST00000487284 IGKV3-11P04433 115 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 HEXBP07686 556 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 NID1P14543 1247 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 SPINK2P20155 84 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 RYKP34925 604 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 RGS8P57771 180 aaPredicted RBP13.11□□□□□ -0.31
CUX1-209ENST00000487284 NPRL3Q12980 569 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 SEC23BQ15437 767 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 LIN52Q52LA3 116 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 DCST1Q5T197 706 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 FAAH2Q6GMR7 532 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 ZAR1Q86SH2 424 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 NLGN4XQ8N0W4 816 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 PARP8Q8N3A8 854 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 ESX1Q8N693 406 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 SETD9Q8NE22 299 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 PLPP5Q8NEB5 264 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 NLGN4YQ8NFZ3 816 aaPredicted RBP13.11□□□□□ -0.31
CUX1-209ENST00000487284 SLC7A13Q8TCU3 470 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 FBLIM1Q8WUP2 373 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 DIO2Q92813 273 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 SENP5Q96HI0 755 aaPredicted RBP13.11□□□□□ -0.31
CUX1-209ENST00000487284 CRB3Q9BUF7 120 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 FNDC11Q9BVV2 318 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 Q9N2J8 555 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 PNO1Q9NRX1 252 aaKnown RBP13.11□□□□□ -0.31
CUX1-209ENST00000487284 NDRG4Q9ULP0 352 aaKnown RBP13.11□□□□□ -0.31
CUX1-209ENST00000487284 HSPE1-MOB4S4R3N1 261 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 FREM2Q5SZK8 3169 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 SH3PXD2BA1X283 911 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 TRABD2BA6NFA1 517 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 PEX12O00623 359 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 FRS3O43559 492 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 DYRK3O43781 588 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 TPST2O60704 377 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 DXOO77932 396 aaKnown RBP13.11□□□□□ -0.31
CUX1-209ENST00000487284 DDAH2O95865 285 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 ADAP00813 363 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 IGKV1D-16P01601 117 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 CYP4B1P13584 511 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 TCN2P20062 427 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 EPHA2P29317 976 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 TPD52P55327 224 aaPredicted RBP13.11□□□□□ -0.31
CUX1-209ENST00000487284 SLC37A1P57057 533 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 ISL1P61371 349 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 RAPSNQ13702 412 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 RTP5Q14D33 572 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 NSDHLQ15738 373 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 LANCL3Q6ZV70 420 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 AQP11Q8NBQ7 271 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 TSPAN14Q8NG11 270 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 OR14A16Q8NHC5 309 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 HRASLS5Q96KN8 279 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 NIPSNAP1Q9BPW8 284 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 MESP1Q9BRJ9 268 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 ITPAQ9BY32 194 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 ING2Q9H160 280 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 ANKRD19PQ9H560 264 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 EVA1AQ9H8M9 152 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 ZNF556Q9HAH1 456 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 ENOPH1Q9UHY7 261 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 NXT1Q9UKK6 140 aaKnown RBP13.11□□□□□ -0.31
CUX1-209ENST00000487284 MGAT4BQ9UQ53 548 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 PTRH2Q9Y3E5 179 aaKnown RBP13.11□□□□□ -0.31
CUX1-209ENST00000487284 PCDHGA10Q9Y5H3 936 aa13.11□□□□□ -0.31
CUX1-209ENST00000487284 NPIPA5A0A0B4J1W7 369 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 CDHR4A6H8M9 788 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 TRIM64CA6NLI5 447 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 CLDN24A6NM45 220 aa13.1□□□□□ -0.31
CUX1-209ENST00000487284 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.1□□□□□ -0.31
CUX1-209ENST00000487284 NPIPA7E9PJI5 369 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms