RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 ZNF141Q15928 474 aa13.33□□□□□ -0.28
LIMS3-205ENST00000487150 GLYR1Q49A26 553 aaPredicted RBP13.33□□□□□ -0.28
LIMS3-205ENST00000487150 KLHL26Q53HC5 615 aa13.33□□□□□ -0.28
LIMS3-205ENST00000487150 PRAMEF8Q5VWM4 474 aa13.33□□□□□ -0.28
LIMS3-205ENST00000487150 PRAMEF7Q5VXH5 474 aa13.33□□□□□ -0.28
LIMS3-205ENST00000487150 AP1ARQ63HQ0 302 aa13.33□□□□□ -0.28
LIMS3-205ENST00000487150 RPTNQ6XPR3 784 aa13.33□□□□□ -0.28
LIMS3-205ENST00000487150 MARCH3Q86UD3 253 aa13.33□□□□□ -0.28
LIMS3-205ENST00000487150 CD163Q86VB7 1156 aa13.33□□□□□ -0.28
LIMS3-205ENST00000487150 CMIPQ8IY22 773 aa13.33□□□□□ -0.28
LIMS3-205ENST00000487150 METTL25Q8N6Q8 603 aa13.33□□□□□ -0.28
LIMS3-205ENST00000487150 ZNF614Q8N883 585 aa13.33□□□□□ -0.28
LIMS3-205ENST00000487150 FAM83FQ8NEG4 500 aaPredicted RBP13.33□□□□□ -0.28
LIMS3-205ENST00000487150 OR2M3Q8NG83 312 aa13.33□□□□□ -0.28
LIMS3-205ENST00000487150 VKORC1Q9BQB6 163 aa13.33□□□□□ -0.28
LIMS3-205ENST00000487150 PIGQQ9BRB3 760 aa13.33□□□□□ -0.28
LIMS3-205ENST00000487150 PAIP1Q9H074 479 aaKnown RBP13.33□□□□□ -0.28
LIMS3-205ENST00000487150 SLC6A15Q9H2J7 730 aa13.33□□□□□ -0.28
LIMS3-205ENST00000487150 SAR1AQ9NR31 198 aa13.33□□□□□ -0.28
LIMS3-205ENST00000487150 SLC35A3Q9Y2D2 325 aa13.33□□□□□ -0.28
LIMS3-205ENST00000487150 DTNAQ9Y4J8 743 aa13.33□□□□□ -0.28
LIMS3-205ENST00000487150 PCDHB14Q9Y5E9 798 aa13.33□□□□□ -0.28
LIMS3-205ENST00000487150 SHANK1Q9Y566 2161 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 CLEC18AA5D8T8 446 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 NPIPA2E9PIF3 369 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 NPIPB9F8W1W9 429 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 NPIPA3F8WFD2 350 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 GTPBP1O00178 669 aaKnown RBP13.32□□□□□ -0.28
LIMS3-205ENST00000487150 HCRTR2O43614 444 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 EIF4E2O60573 245 aaKnown RBP13.32□□□□□ -0.28
LIMS3-205ENST00000487150 CELA3AP09093 270 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 UBL4AP11441 157 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 ZNF17P17021 662 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 CHMP24386 653 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 NFYCQ13952 458 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 RGNQ15493 299 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 GPR68Q15743 365 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 ZSWIM7Q19AV6 140 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 MMEL1Q495T6 779 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.32□□□□□ -0.28
LIMS3-205ENST00000487150 TMEM211Q6ICI0 200 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 CLEC18BQ6UXF7 455 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 LRRC74BQ6ZQY2 392 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 EIF3MQ7L2H7 374 aaKnown RBP13.32□□□□□ -0.28
LIMS3-205ENST00000487150 DHDDSQ86SQ9 333 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 GALNT10Q86SR1 603 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 PCYOX1LQ8NBM8 494 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 CLEC18CQ8NCF0 446 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 PNPT1Q8TCS8 783 aaKnown RBP13.32□□□□□ -0.28
LIMS3-205ENST00000487150 PHOSPHO1Q8TCT1 267 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 DUSP19Q8WTR2 217 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 SSC4DQ8WTU2 575 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 PHF10Q8WUB8 498 aaKnown RBP13.32□□□□□ -0.28
LIMS3-205ENST00000487150 RAB8BQ92930 207 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 ZBTB8AQ96BR9 441 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 C1GALT1C1Q96EU7 318 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 SFXN2Q96NB2 322 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 SH3GL1Q99961 368 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 SAP130Q9H0E3 1048 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 ARMC7Q9H6L4 198 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 SLC52A3Q9NQ40 469 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 FLRT3Q9NZU0 649 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 FBXL2Q9UKC9 423 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 PRDM4Q9UKN5 801 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 LIPGQ9Y5X9 500 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 KCNE3Q9Y6H6 103 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 POLEQ07864 2286 aa13.32□□□□□ -0.28
LIMS3-205ENST00000487150 C7orf72A4D263 438 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 C2orf72A6NCS6 295 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 SERINC4A6NH21 518 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 CCL21O00585 134 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 LRRTM2O43300 516 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 H6PDO95479 791 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 BMP2P12643 396 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 ADH7P40394 386 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 EIF1P41567 113 aaKnown RBP13.31□□□□□ -0.28
LIMS3-205ENST00000487150 SMSP52788 366 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 KLF10Q13118 480 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 CYLC2Q14093 348 aaPredicted RBP13.31□□□□□ -0.28
LIMS3-205ENST00000487150 UBAP2LQ14157 1087 aaKnown RBP13.31□□□□□ -0.28
LIMS3-205ENST00000487150 C3AR1Q16581 482 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 TRMT5Q32P41 509 aaKnown RBP13.31□□□□□ -0.28
LIMS3-205ENST00000487150 C1QL3Q5VWW1 255 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 RAET1LQ5VY80 246 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 OR5M10Q6IEU7 315 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 ZAR1Q86SH2 424 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 CHERPQ8IWX8 916 aaKnown RBP13.31□□□□□ -0.28
LIMS3-205ENST00000487150 PEX5LQ8IYB4 626 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 B4GALNT2Q8NHY0 566 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 ABTB1Q969K4 478 aaPredicted RBP13.31□□□□□ -0.28
LIMS3-205ENST00000487150 FAM107BQ9H098 131 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 DSN1Q9H410 356 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 MTHFD2LQ9H903 347 aaPredicted RBP13.31□□□□□ -0.28
LIMS3-205ENST00000487150 A4GALTQ9NPC4 353 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 GID8Q9NWU2 228 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 TINAGQ9UJW2 476 aa13.31□□□□□ -0.28
LIMS3-205ENST00000487150 AHRRA9YTQ3 701 aa13.3□□□□□ -0.28
LIMS3-205ENST00000487150 C5orf58C9J3I9 102 aa13.3□□□□□ -0.28
LIMS3-205ENST00000487150 ZNF264O43296 627 aa13.3□□□□□ -0.28
LIMS3-205ENST00000487150 SNX3O60493 162 aa13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms