RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 POLDIP3Q9BY77 421 aaKnown RBP10.36□□□□□ -0.75
HDAC6-228ENST00000486227 GPR52Q9Y2T5 361 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 NPIPA5A0A0B4J1W7 369 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 A0A1B0GTL3 188 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 NPIPA7E9PJI5 369 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 GFYI3L273 518 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 M0R129 80 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 YKT6O15498 198 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 CD63P08962 238 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 NPIPA8P0DM63 369 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 OSMP13725 252 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 S100GP29377 79 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 POLR2IP36954 125 aaKnown RBP10.36□□□□□ -0.75
HDAC6-228ENST00000486227 MEX3DQ86XN8 651 aaKnown RBP10.36□□□□□ -0.75
HDAC6-228ENST00000486227 FAM83FQ8NEG4 500 aaPredicted RBP10.36□□□□□ -0.75
HDAC6-228ENST00000486227 TEX10Q9NXF1 929 aaPredicted RBP10.36□□□□□ -0.75
HDAC6-228ENST00000486227 PPP4R1LQ9P1A2 415 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 TMEM265A0A087WTH1 108 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 CTDSP2O14595 271 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 PRKYO43930 277 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 ICMTO60725 284 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 IL33O95760 270 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 MT-ND5P03915 603 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 P04436 131 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 C21orf33P30042 268 aaPredicted RBP10.36□□□□□ -0.75
HDAC6-228ENST00000486227 SMN1Q16637 294 aaKnown RBP10.36□□□□□ -0.75
HDAC6-228ENST00000486227 COMMD7Q86VX2 200 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 PM20D2Q8IYS1 436 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 CELF2-AS1Q8N7Q2 184 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 AKIP1Q9NQ31 210 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 CNIH4Q9P003 139 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 NUP50Q9UKX7 468 aa10.36□□□□□ -0.75
HDAC6-228ENST00000486227 B8ZZF3 427 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 H7C2Y5 167 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 F8A1P23610 371 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 RORAP35398 523 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 AHRP35869 848 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 FOLR3P41439 243 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 ALG10BQ5I7T1 473 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 AGBL5Q8NDL9 886 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 NKD1Q969G9 470 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 SLC41A3Q96GZ6 507 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 FGF22Q9HCT0 170 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 KCMF1Q9P0J7 381 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.35□□□□□ -0.75
HDAC6-228ENST00000486227 TRAPPC13A5PLN9 417 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 ZNF670-ZNF695F2Z2N8 137 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 RFPL3O75679 317 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 NAA10P41227 235 aaPredicted RBP10.35□□□□□ -0.75
HDAC6-228ENST00000486227 EMP2P54851 167 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 TRA2BP62995 288 aaKnown RBP10.35□□□□□ -0.75
HDAC6-228ENST00000486227 SERTAD2Q14140 314 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 TBPL2Q6SJ96 375 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 CYHR1Q6ZMK1 362 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 BTN2A1Q7KYR7 527 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 UBE2Q1Q7Z7E8 422 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 GID4Q8IVV7 300 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 OR2L3Q8NG85 312 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 RBP7Q96R05 134 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 MS4A8Q9BY19 250 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 SLC6A15Q9H2J7 730 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 PISDQ9UG56 409 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 ARID1BQ8NFD5 2236 aaPredicted RBP10.35□□□□□ -0.75
HDAC6-228ENST00000486227 TRBV5-4A0A0C4DH59 114 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 FAM227AF5H4B4 570 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 H0YGG7 62 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 ACOT7O00154 380 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 RNF13O43567 381 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 AIFM1O95831 613 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 TSPAN12O95859 305 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 DCNP07585 359 aaKnown RBP10.35□□□□□ -0.75
HDAC6-228ENST00000486227 FURINP09958 794 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 ARF3P61204 181 aaPredicted RBP10.35□□□□□ -0.75
HDAC6-228ENST00000486227 MAP4K2Q12851 820 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 CCNJQ5T5M9 372 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 PLAG1Q6DJT9 500 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 HS6ST2Q96MM7 605 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 RANGRFQ9HD47 186 aaPredicted RBP10.35□□□□□ -0.75
HDAC6-228ENST00000486227 ATPIF1Q9UII2 106 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 ITGA10O75578 1167 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 ARL6IP5O75915 188 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 CTSLP07711 333 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 TRAPPC2P0DI81 140 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 TRAPPC2BP0DI82 140 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 ARAFP10398 606 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 DDOSTP39656 456 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 MAP3K8P41279 467 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 EIF1AXP47813 144 aaKnown RBP10.35□□□□□ -0.75
HDAC6-228ENST00000486227 GP2P55259 537 aaKnown RBP10.35□□□□□ -0.75
HDAC6-228ENST00000486227 RACK1P63244 317 aaKnown RBP10.35□□□□□ -0.75
HDAC6-228ENST00000486227 RASGEF1BQ0VAM2 473 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 EXOSC7Q15024 291 aaKnown RBP10.35□□□□□ -0.75
HDAC6-228ENST00000486227 GPR19Q15760 415 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 CDS1Q92903 461 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 SGTBQ96EQ0 304 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 DOK1Q99704 481 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 ZDHHC5Q9C0B5 715 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 GAREM1Q9H706 876 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 POT1Q9NUX5 634 aa10.35□□□□□ -0.75
HDAC6-228ENST00000486227 CNOT2Q9NZN8 540 aaKnown RBP10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms