RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 IGKV2-28A0A075B6P5 120 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 TTC26A0AVF1 554 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 ZNF264O43296 627 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 BBOX1O75936 387 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 INSP01308 110 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 IGKV2D-28P01615 120 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 CHRNA1P02708 482 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 SLC35G4P0C7Q5 338 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 ADSSP30520 456 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 PMELP40967 661 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 CASP3P42574 277 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 BTDP43251 543 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 HTR5AP47898 357 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 SLC6A8P48029 635 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 APOC4P55056 127 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 PFN3P60673 137 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 SRP54P61011 504 aaKnown RBP1.78□□□□□ -2.12
VPS50-216ENST00000484954 IL9RQ01113 521 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 PAX5Q02548 391 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 PPP1R8Q12972 351 aaKnown RBP1.78□□□□□ -2.12
VPS50-216ENST00000484954 SHHQ15465 462 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 KCTD19Q17RG1 926 aaPredicted RBP1.78□□□□□ -2.12
VPS50-216ENST00000484954 CYBRD1Q53TN4 286 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 IYDQ6PHW0 289 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 OLFM4Q6UX06 510 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 TOM1L2Q6ZVM7 507 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 P4HA3Q7Z4N8 544 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 TMCO5AQ8N6Q1 288 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 TMEM185AQ8NFB2 350 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 OR2AP1Q8NGE2 309 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 COQ7Q99807 217 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 TMEM121Q9BTD3 319 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 CHRDL1Q9BU40 450 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 RNF126Q9BV68 326 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 CHIAQ9BZP6 476 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 C2orf40Q9H1Z8 148 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 VCXQ9H320 206 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 PAK1IP1Q9NWT1 392 aaPredicted RBP1.78□□□□□ -2.12
VPS50-216ENST00000484954 RIMS3Q9UJD0 308 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 SAMD4AQ9UPU9 718 aaKnown RBP1.78□□□□□ -2.12
VPS50-216ENST00000484954 DYNC1LI1Q9Y6G9 523 aaKnown RBP1.78□□□□□ -2.12
VPS50-216ENST00000484954 CDH10Q9Y6N8 788 aa1.78□□□□□ -2.12
VPS50-216ENST00000484954 DHX29Q7Z478 1369 aaKnown RBP1.77□□□□□ -2.13
VPS50-216ENST00000484954 SMIM28A0A1B0GU29 152 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 A6NDX4 124 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 ALOX15BO15296 676 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 GOSR1O95249 250 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 IGHV4-34P06331 123 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 CCNCP24863 283 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 ATP5DP30049 168 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 CTNNA1P35221 906 aaKnown RBP1.77□□□□□ -2.13
VPS50-216ENST00000484954 GCKP35557 465 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 DHPSP49366 369 aaPredicted RBP1.77□□□□□ -2.13
VPS50-216ENST00000484954 LHX2P50458 406 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 RND3P61587 244 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 MADCAM1Q13477 382 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 TSTA3Q13630 321 aaPredicted RBP1.77□□□□□ -2.13
VPS50-216ENST00000484954 PKN2Q16513 984 aaKnown RBP1.77□□□□□ -2.13
VPS50-216ENST00000484954 CDKN3Q16667 212 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 DNAJC21Q5F1R6 531 aaKnown RBP1.77□□□□□ -2.13
VPS50-216ENST00000484954 PVRIGQ6DKI7 326 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 PAQR9Q6ZVX9 377 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 CYS1Q717R9 158 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 Q7L0L9 218 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 CNTN4Q8IWV2 1026 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 UNC45BQ8IWX7 931 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 CERS5Q8N5B7 392 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 TMEM252Q8N6L7 170 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 Q8N9W7 124 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 RPUSD4Q96CM3 377 aaKnown RBP1.77□□□□□ -2.13
VPS50-216ENST00000484954 NARFLQ9H6Q4 476 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 APMAPQ9HDC9 416 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 NECAP2Q9NVZ3 263 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 ZNF225Q9UK10 706 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 SCML2Q9UQR0 700 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 IFT52Q9Y366 437 aa1.77□□□□□ -2.13
VPS50-216ENST00000484954 GAKO14976 1311 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 A0A0U1RQG5 324 aaPredicted RBP1.76□□□□□ -2.13
VPS50-216ENST00000484954 A0A1W2PRQ8 180 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 ZNF705EA8MWA4 302 aaPredicted RBP1.76□□□□□ -2.13
VPS50-216ENST00000484954 DLGAP1O14490 977 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 CASKO14936 926 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 VEGFDO43915 354 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 EFNA2O43921 213 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 MMP1P03956 469 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 ABHD2P08910 425 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 XRCC1P18887 633 aaPredicted RBP1.76□□□□□ -2.13
VPS50-216ENST00000484954 TSPAN8P19075 237 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 HOXD10P28358 340 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 KIR2DS2P43631 304 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 NOVA1P51513 510 aaKnown RBP1.76□□□□□ -2.13
VPS50-216ENST00000484954 SSTP61278 116 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 HERVK_113P63132 956 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 ERVK-8P63133 956 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 GFPT1Q06210 699 aaPredicted RBP1.76□□□□□ -2.13
VPS50-216ENST00000484954 ST3GAL3Q11203 375 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 TFDP1Q14186 410 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 CARTPTQ16568 116 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 PAGE3Q5JUK9 113 aa1.76□□□□□ -2.13
VPS50-216ENST00000484954 LCA5Q86VQ0 697 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms