RNA–Protein interactions for RNA: ENST00000483922.1

UBR4-213, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 5

Gene UBR4, Length 543 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-213	ENST00000483922	TMEM249	Q2WGJ8	235 aa		11.44	□□□□□ -0.58
UBR4-213	ENST00000483922	UNC50	Q53HI1	259 aa		11.44	□□□□□ -0.58
UBR4-213	ENST00000483922	CPTP	Q5TA50	214 aa		11.44	□□□□□ -0.58
UBR4-213	ENST00000483922	TFAP2E	Q6VUC0	442 aa		11.44	□□□□□ -0.58
UBR4-213	ENST00000483922	DTX2	Q86UW9	622 aa		11.44	□□□□□ -0.58
UBR4-213	ENST00000483922	WDR75	Q8IWA0	830 aa	Known RBP	11.44	□□□□□ -0.58
UBR4-213	ENST00000483922	TUSC5	Q8IXB3	177 aa		11.44	□□□□□ -0.58
UBR4-213	ENST00000483922	FAM9C	Q8IZT9	166 aa		11.44	□□□□□ -0.58
UBR4-213	ENST00000483922	OR2L13	Q8N349	312 aa		11.44	□□□□□ -0.58
UBR4-213	ENST00000483922	GTPBP8	Q8N3Z3	284 aa	Predicted RBP	11.44	□□□□□ -0.58
UBR4-213	ENST00000483922	SPATA4	Q8NEY3	305 aa		11.44	□□□□□ -0.58
UBR4-213	ENST00000483922	ABHD3	Q8WU67	409 aa		11.44	□□□□□ -0.58
UBR4-213	ENST00000483922	HTRA1	Q92743	480 aa		11.44	□□□□□ -0.58
UBR4-213	ENST00000483922	OSTF1	Q92882	214 aa		11.44	□□□□□ -0.58
UBR4-213	ENST00000483922	ELP4	Q96EB1	424 aa		11.44	□□□□□ -0.58
UBR4-213	ENST00000483922	RNF145	Q96MT1	663 aa		11.44	□□□□□ -0.58
UBR4-213	ENST00000483922	EBPL	Q9BY08	206 aa		11.44	□□□□□ -0.58
UBR4-213	ENST00000483922	SRXN1	Q9BYN0	137 aa		11.44	□□□□□ -0.58
UBR4-213	ENST00000483922	GRIP2	Q9C0E4	1043 aa		11.44	□□□□□ -0.58
UBR4-213	ENST00000483922	TENM1	Q9UKZ4	2725 aa		11.44	□□□□□ -0.58
UBR4-213	ENST00000483922		A0A1W2PP18	115 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922		A0A1W2PRB8	838 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	FAM234B	A2RU67	622 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	SMIM24	O75264	130 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	ADA	P00813	363 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	ZNF17	P17021	662 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	GABRA3	P34903	492 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	PAFAH1B1	P43034	410 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	NCBP2	P52298	156 aa	Known RBP eCLIP	11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	CLC	Q05315	142 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	C2orf80	Q0P641	193 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	PLPPR5	Q32ZL2	321 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	FAM71E1	Q6IPT2	247 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	C11orf71	Q6IPW1	123 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	GALNT18	Q6P9A2	607 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	GATS	Q8NAP1	163 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	STEAP2	Q8NFT2	490 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	FAM110B	Q8TC76	370 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	HSD17B8	Q92506	261 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	HOXB13	Q92826	284 aa	Predicted RBP	11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	TNFRSF13C	Q96RJ3	184 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	BBS4	Q96RK4	519 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	KCNA7	Q96RP8	456 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	NAPG	Q99747	312 aa	Predicted RBP	11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	TACO1	Q9BSH4	297 aa	Known RBP	11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	C19orf24	Q9BVV8	132 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	HDHD5	Q9BXW7	423 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	ESRP2	Q9H6T0	727 aa	Known RBP	11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	GLRX2	Q9NS18	164 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	MED17	Q9NVC6	651 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	NMRK1	Q9NWW6	199 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	SIRT5	Q9NXA8	310 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	CISD1	Q9NZ45	108 aa	Known RBP	11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	NPAP1	Q9NZP6	1156 aa		11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	MCTS1	Q9ULC4	181 aa	Known RBP	11.43	□□□□□ -0.58
UBR4-213	ENST00000483922	GNG14	A0A1W2PPG7	69 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	C7orf72	A4D263	438 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	ALG1L2	C9J202	215 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	TUBB	P07437	444 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	COL6A2	P12110	1019 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	HSD3B1	P14060	373 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	HSD3B2	P26439	372 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	TIA1	P31483	386 aa	Known RBP eCLIP	11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	SLC18A2	Q05940	514 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	BTK	Q06187	659 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	HEPACAM	Q14CZ8	416 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	HBM	Q6B0K9	141 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	ESPNL	Q6ZVH7	1005 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	LILRA2	Q8N149	483 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	CEP112	Q8N8E3	955 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	RNF128	Q8TEB7	428 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	AMDHD1	Q96NU7	426 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	TBL1XR1	Q9BZK7	514 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	ZDHHC18	Q9NUE0	388 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	TAS2R7	Q9NYW3	318 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	NINJ2	Q9NZG7	142 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	PRSS50	Q9UI38	385 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	CDC42EP3	Q9UKI2	254 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	TMCO1	Q9UM00	188 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	TIMM22	Q9Y584	194 aa		11.42	□□□□□ -0.58
UBR4-213	ENST00000483922	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		11.41	□□□□□ -0.58
UBR4-213	ENST00000483922		A0A087WZY1	265 aa		11.41	□□□□□ -0.58
UBR4-213	ENST00000483922	ELOA3D	A6NLF2	546 aa	Predicted RBP	11.41	□□□□□ -0.58
UBR4-213	ENST00000483922		E7EQL1	145 aa		11.41	□□□□□ -0.58
UBR4-213	ENST00000483922	OIP5	O43482	229 aa		11.41	□□□□□ -0.58
UBR4-213	ENST00000483922	COQ9	O75208	318 aa		11.41	□□□□□ -0.58
UBR4-213	ENST00000483922	NKX2-2	O95096	273 aa		11.41	□□□□□ -0.58
UBR4-213	ENST00000483922	SYNGR4	O95473	234 aa		11.41	□□□□□ -0.58
UBR4-213	ENST00000483922	OXSR1	O95747	527 aa	Predicted RBP	11.41	□□□□□ -0.58
UBR4-213	ENST00000483922	ANXA4	P09525	319 aa	Predicted RBP	11.41	□□□□□ -0.58
UBR4-213	ENST00000483922	LINGO3	P0C6S8	592 aa		11.41	□□□□□ -0.58
UBR4-213	ENST00000483922	DDC	P20711	480 aa		11.41	□□□□□ -0.58
UBR4-213	ENST00000483922	MANF	P55145	182 aa	Known RBP	11.41	□□□□□ -0.58
UBR4-213	ENST00000483922	CARD18	P57730	90 aa		11.41	□□□□□ -0.58
UBR4-213	ENST00000483922	VLDLR	P98155	873 aa		11.41	□□□□□ -0.58
UBR4-213	ENST00000483922	LOXL1	Q08397	574 aa	Predicted RBP	11.41	□□□□□ -0.58
UBR4-213	ENST00000483922	P2RY6	Q15077	328 aa		11.41	□□□□□ -0.58
UBR4-213	ENST00000483922	CD226	Q15762	336 aa		11.41	□□□□□ -0.58
UBR4-213	ENST00000483922	ZNF239	Q16600	458 aa	Known RBP	11.41	□□□□□ -0.58
UBR4-213	ENST00000483922	ELOA3B	Q3SY89	546 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms