RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 A0A087WZY1 265 aa15.26■□□□□ 0.03
VIM-204ENST00000478746 GNG14A0A1W2PPG7 69 aa15.26■□□□□ 0.03
VIM-204ENST00000478746 HMX2A2RU54 273 aa15.26■□□□□ 0.03
VIM-204ENST00000478746 ELOA3DA6NLF2 546 aaPredicted RBP15.26■□□□□ 0.03
VIM-204ENST00000478746 UBFD1O14562 309 aaKnown RBP15.26■□□□□ 0.03
VIM-204ENST00000478746 OTCP00480 354 aa15.26■□□□□ 0.03
VIM-204ENST00000478746 ADAP00813 363 aa15.26■□□□□ 0.03
VIM-204ENST00000478746 RBP1P09455 135 aa15.26■□□□□ 0.03
VIM-204ENST00000478746 PABPC4LP0CB38 370 aaKnown RBP15.26■□□□□ 0.03
VIM-204ENST00000478746 SRD5A1P18405 259 aa15.26■□□□□ 0.03
VIM-204ENST00000478746 C21orf58P58505 322 aa15.26■□□□□ 0.03
VIM-204ENST00000478746 PRR5P85299 388 aa15.26■□□□□ 0.03
VIM-204ENST00000478746 CSTF3Q12996 717 aaKnown RBP15.26■□□□□ 0.03
VIM-204ENST00000478746 ZNHIT3Q15649 155 aaPredicted RBP15.26■□□□□ 0.03
VIM-204ENST00000478746 ELOA3BQ3SY89 546 aa15.26■□□□□ 0.03
VIM-204ENST00000478746 CPTPQ5TA50 214 aa15.26■□□□□ 0.03
VIM-204ENST00000478746 LETMD1Q6P1Q0 360 aa15.26■□□□□ 0.03
VIM-204ENST00000478746 APOOLQ6UXV4 268 aa15.26■□□□□ 0.03
VIM-204ENST00000478746 TFAP2EQ6VUC0 442 aa15.26■□□□□ 0.03
VIM-204ENST00000478746 RPS27LQ71UM5 84 aaKnown RBP15.26■□□□□ 0.03
VIM-204ENST00000478746 NUFIP2Q7Z417 695 aaKnown RBP15.26■□□□□ 0.03
VIM-204ENST00000478746 CCDC25Q86WR0 208 aa15.26■□□□□ 0.03
VIM-204ENST00000478746 GTPBP8Q8N3Z3 284 aaPredicted RBP15.26■□□□□ 0.03
VIM-204ENST00000478746 ELOA3Q8NG57 546 aa15.26■□□□□ 0.03
VIM-204ENST00000478746 SLC9A6Q92581 669 aa15.26■□□□□ 0.03
VIM-204ENST00000478746 ERP44Q9BS26 406 aa15.26■□□□□ 0.03
VIM-204ENST00000478746 VPS11Q9H270 941 aa15.26■□□□□ 0.03
VIM-204ENST00000478746 DMGDHQ9UI17 866 aaKnown RBP15.26■□□□□ 0.03
VIM-204ENST00000478746 C19orf53Q9UNZ5 99 aaPredicted RBP15.26■□□□□ 0.03
VIM-204ENST00000478746 A0A087WV62 115 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 SHISA9B4DS77 424 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 PPP6CO00743 305 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 PCDH7O60245 1069 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 LMX1BO60663 402 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 SMIM24O75264 130 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 SLC25A16P16260 332 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 ME2P23368 584 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 MAGEA4P43358 317 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 IRX1P78414 480 aaPredicted RBP15.25■□□□□ 0.03
VIM-204ENST00000478746 ITGADQ13349 1161 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 P2RY6Q15077 328 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 TUSC5Q8IXB3 177 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 PLD6Q8N2A8 252 aaKnown RBP15.25■□□□□ 0.03
VIM-204ENST00000478746 ARIH2OSQ8N7S6 290 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 BANPQ8N9N5 519 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 C16orf78Q8WTQ4 265 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 NPAS1Q99742 590 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 CACNG6Q9BXT2 260 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 POTEKPQ9BYX7 375 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 TMEM185BQ9H7F4 350 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 NFU1Q9UMS0 254 aa15.25■□□□□ 0.03
VIM-204ENST00000478746 FAM187AA6NFU0 413 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 JUNP05412 331 aaKnown RBP15.24■□□□□ 0.03
VIM-204ENST00000478746 HSD3B1P14060 373 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 TSPAN8P19075 237 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 HSD3B2P26439 372 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 NCBP2P52298 156 aaKnown RBP eCLIP15.24■□□□□ 0.03
VIM-204ENST00000478746 CDH11P55287 796 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 CDH13P55290 713 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 GNG11P61952 73 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 RAE1P78406 368 aaKnown RBP15.24■□□□□ 0.03
VIM-204ENST00000478746 RUNX1T1Q06455 604 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 RAB35Q15286 201 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 RNPS1Q15287 305 aaKnown RBP15.24■□□□□ 0.03
VIM-204ENST00000478746 GRAMD1BQ3KR37 738 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 FAM219BQ5XKK7 198 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 TMEM107Q6UX40 140 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 SEZ6L2Q6UXD5 910 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 BHLHA15Q7RTS1 189 aaPredicted RBP15.24■□□□□ 0.03
VIM-204ENST00000478746 ABHD3Q8WU67 409 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 ZBTB8AQ96BR9 441 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 RNF145Q96MT1 663 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 NAPGQ99747 312 aaPredicted RBP15.24■□□□□ 0.03
VIM-204ENST00000478746 C3orf14Q9HBI5 128 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 HHATLQ9HCP6 504 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 TIGARQ9NQ88 270 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 RNF14Q9UBS8 474 aa15.24■□□□□ 0.03
VIM-204ENST00000478746 A0A1W2PRB8 838 aa15.23■□□□□ 0.03
VIM-204ENST00000478746 C7orf72A4D263 438 aa15.23■□□□□ 0.03
VIM-204ENST00000478746 MYO1GB0I1T2 1018 aa15.23■□□□□ 0.03
VIM-204ENST00000478746 UPK1AO00322 258 aa15.23■□□□□ 0.03
VIM-204ENST00000478746 MANBAO00462 879 aa15.23■□□□□ 0.03
VIM-204ENST00000478746 OR4F21O95013 312 aa15.23■□□□□ 0.03
VIM-204ENST00000478746 IGHV4-31P0DP07 118 aa15.23■□□□□ 0.03
VIM-204ENST00000478746 CHN1P15882 459 aa15.23■□□□□ 0.03
VIM-204ENST00000478746 PSMA4P25789 261 aaKnown RBP15.23■□□□□ 0.03
VIM-204ENST00000478746 GABRA3P34903 492 aa15.23■□□□□ 0.03
VIM-204ENST00000478746 SERPINB8P50452 374 aa15.23■□□□□ 0.03
VIM-204ENST00000478746 ZNF41P51814 821 aaPredicted RBP15.23■□□□□ 0.03
VIM-204ENST00000478746 UAP1Q16222 522 aaPredicted RBP15.23■□□□□ 0.03
VIM-204ENST00000478746 LILRA2Q8N149 483 aa15.23■□□□□ 0.03
VIM-204ENST00000478746 CDYL2Q8N8U2 506 aa15.23■□□□□ 0.03
VIM-204ENST00000478746 RNF128Q8TEB7 428 aa15.23■□□□□ 0.03
VIM-204ENST00000478746 MUCL1Q96DR8 90 aa15.23■□□□□ 0.03
VIM-204ENST00000478746 KLHL15Q96M94 604 aa15.23■□□□□ 0.03
VIM-204ENST00000478746 SHCBP1LQ9BZQ2 653 aa15.23■□□□□ 0.03
VIM-204ENST00000478746 MANSC1Q9H8J5 431 aa15.23■□□□□ 0.03
VIM-204ENST00000478746 MED17Q9NVC6 651 aa15.23■□□□□ 0.03
VIM-204ENST00000478746 DDX18Q9NVP1 670 aaKnown RBP15.23■□□□□ 0.03
VIM-204ENST00000478746 GRHL1Q9NZI5 618 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms