RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, human

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VARS-223	ENST00000474643	CTAG2	O75638	210 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	KCNH1	O95259	989 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	CPSF4	O95639	269 aa	Known RBP	13.73	□□□□□ -0.21
VARS-223	ENST00000474643	VIM	P08670	466 aa	Known RBP	13.73	□□□□□ -0.21
VARS-223	ENST00000474643	ALDOC	P09972	364 aa	Known RBP	13.73	□□□□□ -0.21
VARS-223	ENST00000474643	TROVE2	P10155	538 aa	Known RBP eCLIP	13.73	□□□□□ -0.21
VARS-223	ENST00000474643	DPP4	P27487	766 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	SRD5A2	P31213	254 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	S100A3	P33764	101 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	GABRA3	P34903	492 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	PRIM2	P49643	509 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	ZNF136	P52737	540 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	PNLIPRP2	P54317	469 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	C21orf58	P58505	322 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	STX5	Q13190	355 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	TP53BP2	Q13625	1128 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	ANXA8L1	Q5VT79	327 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	RAET1L	Q5VY80	246 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	NPSR1	Q6W5P4	371 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	SPNS3	Q6ZMD2	512 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	CDRT4	Q8N9R6	151 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	CHDH	Q8NE62	594 aa	Predicted RBP	13.73	□□□□□ -0.21
VARS-223	ENST00000474643	OR4A15	Q8NGL6	344 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	13.73	□□□□□ -0.21
VARS-223	ENST00000474643	ZPLD1	Q8TCW7	415 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	ACTRT2	Q8TDY3	377 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	NRGN	Q92686	78 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	SLC35A4	Q96G79	324 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	MARK4	Q96L34	752 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	ZFP3	Q96NJ6	502 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	TUBA1C	Q9BQE3	449 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	OR2B2	Q9GZK3	357 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	NSRP1	Q9H0G5	558 aa	Known RBP	13.73	□□□□□ -0.21
VARS-223	ENST00000474643	NEUROD4	Q9HD90	331 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	MRGBP	Q9NV56	204 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	CBLC	Q9ULV8	474 aa		13.73	□□□□□ -0.21
VARS-223	ENST00000474643	ARHGAP21	Q5T5U3	1957 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643		A6NNC1	897 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	CLCA1	A8K7I4	914 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643		E9PBE3	544 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	ALOX5	P09917	674 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	IDO1	P14902	403 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	CPN1	P15169	458 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	EVI2B	P34910	448 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	CPOX	P36551	454 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	CCT3	P49368	545 aa	Known RBP	13.72	□□□□□ -0.21
VARS-223	ENST00000474643	STX1B	P61266	288 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	UFM1	P61960	85 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	PSG6	Q00889	435 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	GAB1	Q13480	694 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	DPY19L1	Q2PZI1	675 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	FAM174B	Q3ZCQ3	159 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	CYP27C1	Q4G0S4	372 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	BHLHB9	Q6PI77	547 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	EPGN	Q6UW88	154 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	MAVS	Q7Z434	540 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	CAMKMT	Q7Z624	323 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	LUZP2	Q86TE4	346 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	UBQLNL	Q8IYU4	475 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	GCNT2	Q8N0V5	402 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	MEIOB	Q8N635	442 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	WDSUB1	Q8N9V3	476 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	OR4N2	Q8NGD1	307 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	OR56A1	Q8NGH5	318 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	MOAP1	Q96BY2	351 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	INTS12	Q96CB8	462 aa	Known RBP	13.72	□□□□□ -0.21
VARS-223	ENST00000474643	FAM120B	Q96EK7	910 aa	Known RBP	13.72	□□□□□ -0.21
VARS-223	ENST00000474643	OR52B2	Q96RD2	323 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	LMF2	Q9BU23	707 aa	Known RBP	13.72	□□□□□ -0.21
VARS-223	ENST00000474643	SFXN3	Q9BWM7	321 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	RBM24	Q9BX46	236 aa	Known RBP	13.72	□□□□□ -0.21
VARS-223	ENST00000474643	PTGES2	Q9H7Z7	377 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	FBXL2	Q9UKC9	423 aa		13.72	□□□□□ -0.21
VARS-223	ENST00000474643	FAF1	Q9UNN5	650 aa	Predicted RBP	13.72	□□□□□ -0.21
VARS-223	ENST00000474643		C9JVG2	144 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	RNASET2	O00584	256 aa	Known RBP	13.71	□□□□□ -0.21
VARS-223	ENST00000474643	PSMG1	O95456	288 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	IL18BP	O95998	194 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	KRT16	P08779	473 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	PTGDS	P41222	190 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	AQP5	P55064	265 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	GNGT1	P63211	74 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	LASP1	Q14847	261 aa	Known RBP	13.71	□□□□□ -0.21
VARS-223	ENST00000474643	GSTA3	Q16772	222 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	FBXL19-AS1	Q494R0	122 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	SPANXN4	Q5MJ08	99 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	PPP4R4	Q6NUP7	873 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	ANKRD46	Q86W74	232 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	CLECL1	Q8IZS7	167 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	COX18	Q8N8Q8	333 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	C9orf106	Q8NAJ2	232 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	OR8J2	Q8NGG1	315 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	OR5AK3P	Q8NH89	298 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	SFXN5	Q8TD22	340 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	PIK3R3	Q92569	461 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	NINJ1	Q92982	152 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	TESC	Q96BS2	214 aa		13.71	□□□□□ -0.21
VARS-223	ENST00000474643	THOC1	Q96FV9	657 aa	Known RBP	13.71	□□□□□ -0.21
VARS-223	ENST00000474643	OTUB1	Q96FW1	271 aa	Predicted RBP	13.71	□□□□□ -0.21
VARS-223	ENST00000474643	CCDC28B	Q9BUN5	200 aa		13.71	□□□□□ -0.21

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