RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 KLHL26Q53HC5 615 aa13.9□□□□□ -0.18
SDC3-203ENST00000471567 EIPR1Q53HC9 387 aa13.9□□□□□ -0.18
SDC3-203ENST00000471567 WIPI1Q5MNZ9 446 aaPredicted RBP13.9□□□□□ -0.18
SDC3-203ENST00000471567 WLSQ5T9L3 541 aa13.9□□□□□ -0.18
SDC3-203ENST00000471567 VASNQ6EMK4 673 aa13.9□□□□□ -0.18
SDC3-203ENST00000471567 DNAJC14Q6Y2X3 702 aaPredicted RBP13.9□□□□□ -0.18
SDC3-203ENST00000471567 CD163Q86VB7 1156 aa13.9□□□□□ -0.18
SDC3-203ENST00000471567 OR14L1PQ8NHC6 308 aa13.9□□□□□ -0.18
SDC3-203ENST00000471567 RAB8BQ92930 207 aa13.9□□□□□ -0.18
SDC3-203ENST00000471567 ROPN1LQ96C74 230 aa13.9□□□□□ -0.18
SDC3-203ENST00000471567 VKORC1Q9BQB6 163 aa13.9□□□□□ -0.18
SDC3-203ENST00000471567 SAP130Q9H0E3 1048 aa13.9□□□□□ -0.18
SDC3-203ENST00000471567 TP63Q9H3D4 680 aaPredicted RBP13.9□□□□□ -0.18
SDC3-203ENST00000471567 RAD21L1Q9H4I0 556 aa13.9□□□□□ -0.18
SDC3-203ENST00000471567 THUMPD1Q9NXG2 353 aaKnown RBP13.9□□□□□ -0.18
SDC3-203ENST00000471567 TAS2R10Q9NYW0 307 aa13.9□□□□□ -0.18
SDC3-203ENST00000471567 MED11Q9P086 117 aa13.9□□□□□ -0.18
SDC3-203ENST00000471567 SPRR3Q9UBC9 169 aa13.9□□□□□ -0.18
SDC3-203ENST00000471567 SUCOQ9UBS9 1254 aaKnown RBP13.9□□□□□ -0.18
SDC3-203ENST00000471567 DKKL1Q9UK85 242 aa13.9□□□□□ -0.18
SDC3-203ENST00000471567 MEMO1Q9Y316 297 aa13.9□□□□□ -0.18
SDC3-203ENST00000471567 DTNAQ9Y4J8 743 aa13.9□□□□□ -0.18
SDC3-203ENST00000471567 RELNP78509 3460 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 C15orf38-AP3S2A0A0A6YYH1 394 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 B4DXG7 233 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 H3BNH8 94 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 ZIC3O60481 467 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 FCMRO60667 390 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 ACTL6AO96019 429 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 C1QCP02747 245 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 HOXD4P09016 255 aaPredicted RBP13.89□□□□□ -0.19
SDC3-203ENST00000471567 HOXB9P17482 250 aaPredicted RBP13.89□□□□□ -0.19
SDC3-203ENST00000471567 ADSLP30566 484 aaPredicted RBP13.89□□□□□ -0.19
SDC3-203ENST00000471567 CRYZQ08257 329 aaKnown RBP13.89□□□□□ -0.19
SDC3-203ENST00000471567 ZNF141Q15928 474 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 ZNF630Q2M218 657 aaPredicted RBP13.89□□□□□ -0.19
SDC3-203ENST00000471567 GLYR1Q49A26 553 aaPredicted RBP13.89□□□□□ -0.19
SDC3-203ENST00000471567 GTDC1Q4AE62 458 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 EMC4Q5J8M3 183 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 PAGE3Q5JUK9 113 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 COX20Q5RI15 118 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 YRDCQ86U90 279 aaKnown RBP13.89□□□□□ -0.19
SDC3-203ENST00000471567 PNPT1Q8TCS8 783 aaKnown RBP13.89□□□□□ -0.19
SDC3-203ENST00000471567 PHF10Q8WUB8 498 aaKnown RBP13.89□□□□□ -0.19
SDC3-203ENST00000471567 C10orf82Q8WW14 230 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 PMM1Q92871 262 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 TRNT1Q96Q11 434 aaKnown RBP13.89□□□□□ -0.19
SDC3-203ENST00000471567 SH3BGRL2Q9UJC5 107 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 LEF1Q9UJU2 399 aaPredicted RBP13.89□□□□□ -0.19
SDC3-203ENST00000471567 SLC6A5Q9Y345 797 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 NDUFAF1Q9Y375 327 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 WDR45Q9Y484 360 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 GMEB1Q9Y692 573 aa13.89□□□□□ -0.19
SDC3-203ENST00000471567 FREM3P0C091 2139 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 USP9XQ93008 2570 aaPredicted RBP13.88□□□□□ -0.19
SDC3-203ENST00000471567 PRAMEF27A3QJZ7 478 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 FIGNL2A6NMB9 653 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 C17orf51A8MQB3 221 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 CLIC1O00299 241 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 KIAA0513O60268 411 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 WDR1O75083 606 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 SNRPB2P08579 225 aaKnown RBP13.88□□□□□ -0.19
SDC3-203ENST00000471567 GABRA1P14867 456 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 BMP7P18075 431 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 PPIBP23284 216 aaKnown RBP13.88□□□□□ -0.19
SDC3-203ENST00000471567 CHMP24386 653 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 CRATP43155 626 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 HPCAP84074 193 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 FUT5Q11128 374 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 FADDQ13158 208 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 GPR68Q15743 365 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 CD226Q15762 336 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.88□□□□□ -0.19
SDC3-203ENST00000471567 TMEM211Q6ICI0 200 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 TYW3Q6IPR3 259 aaKnown RBP13.88□□□□□ -0.19
SDC3-203ENST00000471567 LRRC74BQ6ZQY2 392 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 IFNEQ86WN2 208 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 PM20D2Q8IYS1 436 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 DPP10Q8N608 796 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 ABTB1Q969K4 478 aaPredicted RBP13.88□□□□□ -0.19
SDC3-203ENST00000471567 C1GALT1C1Q96EU7 318 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 AURKBQ96GD4 344 aaPredicted RBP13.88□□□□□ -0.19
SDC3-203ENST00000471567 DMRTA2Q96SC8 542 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 TIMP4Q99727 224 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 UGT2B28Q9BY64 529 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 SAR1AQ9NR31 198 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 PNPLA3Q9NST1 481 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 SLC25A37Q9NYZ2 338 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 MKLN1Q9UL63 735 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 LRRK2Q5S007 2527 aa13.88□□□□□ -0.19
SDC3-203ENST00000471567 MYO7BQ6PIF6 2116 aa13.87□□□□□ -0.19
SDC3-203ENST00000471567 A0A087WZY1 265 aa13.87□□□□□ -0.19
SDC3-203ENST00000471567 TRBV5-3A0A0A0MS03 114 aa13.87□□□□□ -0.19
SDC3-203ENST00000471567 NPIPA5A0A0B4J1W7 369 aa13.87□□□□□ -0.19
SDC3-203ENST00000471567 AHRRA9YTQ3 701 aa13.87□□□□□ -0.19
SDC3-203ENST00000471567 NPIPA7E9PJI5 369 aa13.87□□□□□ -0.19
SDC3-203ENST00000471567 LINC01387J3KSC0 135 aa13.87□□□□□ -0.19
SDC3-203ENST00000471567 ANGPT2O15123 496 aa13.87□□□□□ -0.19
SDC3-203ENST00000471567 SLC22A2O15244 555 aa13.87□□□□□ -0.19
SDC3-203ENST00000471567 ZIC2O95409 532 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms