RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 NPPAP01160 153 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 IGHG3P01860 377 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 CHRM4P08173 479 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 CELA3AP09093 270 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 NUDT7P0C024 238 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 TFPTP0C1Z6 253 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 COX4I1P13073 169 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 CHRNEQ04844 493 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 MRPL49Q13405 166 aaKnown RBP10.89□□□□□ -0.67
VPS13D-204ENST00000469054 ELOAQ14241 798 aaKnown RBP10.89□□□□□ -0.67
VPS13D-204ENST00000469054 CAPRIN1Q14444 709 aaKnown RBP10.89□□□□□ -0.67
VPS13D-204ENST00000469054 MAPK11Q15759 364 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 FRRS1Q6ZNA5 592 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 MISPQ8IVT2 679 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 ZNF619Q8N2I2 560 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 OR4K17Q8NGC6 315 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 SLC38A5Q8WUX1 472 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 LRRC58Q96CX6 371 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 LRRC37BQ96QE4 947 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 CPPED1Q9BRF8 314 aaPredicted RBP10.89□□□□□ -0.67
VPS13D-204ENST00000469054 SLC38A1Q9H2H9 487 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 ACKR4Q9NPB9 350 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 MED11Q9P086 117 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 KCNE5Q9UJ90 142 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 FBXL2Q9UKC9 423 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 DTNAQ9Y4J8 743 aa10.89□□□□□ -0.67
VPS13D-204ENST00000469054 TMEM247A6NEH6 219 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 B4DXG7 233 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 H3BNH8 94 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 PYCARD-AS1I3L0S3 204 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 HCN1O60741 890 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 UGT2B17O75795 530 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 DCTN3O75935 186 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 HPNP05981 417 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 BCHEP06276 602 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 HOXB1P14653 301 aaPredicted RBP10.88□□□□□ -0.67
VPS13D-204ENST00000469054 ENDOUP21128 410 aaKnown RBP10.88□□□□□ -0.67
VPS13D-204ENST00000469054 GNLYP22749 145 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 CRISP3P54108 245 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 HSF1Q00613 529 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 RBPJQ06330 500 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 SELPLGQ14242 412 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 GNA13Q14344 377 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 TOMM20Q15388 145 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 CD226Q15762 336 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 ZNF141Q15928 474 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 PDZK1Q5T2W1 519 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 GCNT6Q5T4J0 391 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 NANOGP8Q6NSW7 305 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 ARHGAP11AQ6P4F7 1023 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 TRILQ7L0X0 811 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 MTERF4Q7Z6M4 381 aaKnown RBP10.88□□□□□ -0.67
VPS13D-204ENST00000469054 C10orf111Q8N326 155 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 ZNF614Q8N883 585 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 FADS6Q8N9I5 356 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 GATSQ8NAP1 163 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 OR2M3Q8NG83 312 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 PHOSPHO1Q8TCT1 267 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 OIT3Q8WWZ8 545 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 PMM1Q92871 262 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 MAL2Q969L2 176 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 RCN3Q96D15 328 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 ZG16BQ96DA0 208 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 CMTM5Q96DZ9 223 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 DTNBP1Q96EV8 351 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 SH3GL1Q99961 368 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 SLC39A3Q9BRY0 314 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 THUMPD3Q9BV44 507 aaKnown RBP10.88□□□□□ -0.67
VPS13D-204ENST00000469054 TRIM8Q9BZR9 551 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 DSN1Q9H410 356 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 LDAHQ9H6V9 325 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 MTHFD2LQ9H903 347 aaPredicted RBP10.88□□□□□ -0.67
VPS13D-204ENST00000469054 NANOGQ9H9S0 305 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 A4GALTQ9NPC4 353 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 GID8Q9NWU2 228 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 CALML5Q9NZT1 146 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 LIPGQ9Y5X9 500 aa10.88□□□□□ -0.67
VPS13D-204ENST00000469054 KALRNO60229 2985 aa10.87□□□□□ -0.67
VPS13D-204ENST00000469054 TRGV5A0A0B4J1U4 118 aa10.87□□□□□ -0.67
VPS13D-204ENST00000469054 CENPVL1A0A0U1RR11 272 aa10.87□□□□□ -0.67
VPS13D-204ENST00000469054 A0A1B0GTH9 108 aa10.87□□□□□ -0.67
VPS13D-204ENST00000469054 A0A1B0GVC2 190 aa10.87□□□□□ -0.67
VPS13D-204ENST00000469054 SERINC4A6NH21 518 aa10.87□□□□□ -0.67
VPS13D-204ENST00000469054 FXYD1O00168 92 aa10.87□□□□□ -0.67
VPS13D-204ENST00000469054 AIM2O14862 343 aa10.87□□□□□ -0.67
VPS13D-204ENST00000469054 SUSD5O60279 629 aa10.87□□□□□ -0.67
VPS13D-204ENST00000469054 ARAFP10398 606 aa10.87□□□□□ -0.67
VPS13D-204ENST00000469054 DPP4P27487 766 aa10.87□□□□□ -0.67
VPS13D-204ENST00000469054 MSX1P28360 303 aa10.87□□□□□ -0.67
VPS13D-204ENST00000469054 PRDX6P30041 224 aa10.87□□□□□ -0.67
VPS13D-204ENST00000469054 SRD5A2P31213 254 aa10.87□□□□□ -0.67
VPS13D-204ENST00000469054 ADH7P40394 386 aa10.87□□□□□ -0.67
VPS13D-204ENST00000469054 UQCRFS1P47985 274 aa10.87□□□□□ -0.67
VPS13D-204ENST00000469054 DSCR4P56555 118 aaPredicted RBP10.87□□□□□ -0.67
VPS13D-204ENST00000469054 MTPNP58546 118 aa10.87□□□□□ -0.67
VPS13D-204ENST00000469054 MAPK14Q16539 360 aa10.87□□□□□ -0.67
VPS13D-204ENST00000469054 ZNF630Q2M218 657 aaPredicted RBP10.87□□□□□ -0.67
VPS13D-204ENST00000469054 EIF2S3LQ2VIR3 472 aaKnown RBP10.87□□□□□ -0.67
VPS13D-204ENST00000469054 EIPR1Q53HC9 387 aa10.87□□□□□ -0.67
VPS13D-204ENST00000469054 YRDCQ86U90 279 aaKnown RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms