RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 CXXC5Q7LFL8 322 aaKnown RBP11□□□□□ -0.65
CD44-209ENST00000433892 PAQR7Q86WK9 346 aa11□□□□□ -0.65
CD44-209ENST00000433892 PEX5LQ8IYB4 626 aa11□□□□□ -0.65
CD44-209ENST00000433892 SHISA5Q8N114 240 aa11□□□□□ -0.65
CD44-209ENST00000433892 GAL3ST3Q96A11 431 aa11□□□□□ -0.65
CD44-209ENST00000433892 TBX5Q99593 518 aa11□□□□□ -0.65
CD44-209ENST00000433892 SOSTQ9BQB4 213 aa11□□□□□ -0.65
CD44-209ENST00000433892 DPH1Q9BZG8 443 aa11□□□□□ -0.65
CD44-209ENST00000433892 ENKD1Q9H0I2 346 aa11□□□□□ -0.65
CD44-209ENST00000433892 KIR3DX1Q9H7L2 352 aa11□□□□□ -0.65
CD44-209ENST00000433892 TMEM74BQ9NUR3 256 aa11□□□□□ -0.65
CD44-209ENST00000433892 MED17Q9NVC6 651 aa11□□□□□ -0.65
CD44-209ENST00000433892 PAQR5Q9NXK6 330 aaPredicted RBP11□□□□□ -0.65
CD44-209ENST00000433892 COLEC10Q9Y6Z7 277 aa11□□□□□ -0.65
CD44-209ENST00000433892 TBC1D3DA0A087WVF3 549 aa11□□□□□ -0.65
CD44-209ENST00000433892 TBC1D3IA0A087WXS9 549 aa11□□□□□ -0.65
CD44-209ENST00000433892 TBC1D3EA0A087X179 549 aa11□□□□□ -0.65
CD44-209ENST00000433892 TBC1D3KA0A087X1G2 549 aa11□□□□□ -0.65
CD44-209ENST00000433892 TBC1D3FA6NER0 549 aaPredicted RBP11□□□□□ -0.65
CD44-209ENST00000433892 TTC36A6NLP5 189 aa11□□□□□ -0.65
CD44-209ENST00000433892 GRXCR1A8MXD5 290 aa11□□□□□ -0.65
CD44-209ENST00000433892 TBC1D3LB9A6J9 549 aa11□□□□□ -0.65
CD44-209ENST00000433892 ZGLP1P0C6A0 271 aa11□□□□□ -0.65
CD44-209ENST00000433892 TBC1D3HP0C7X1 549 aa11□□□□□ -0.65
CD44-209ENST00000433892 GKN3PP0CG01 181 aa11□□□□□ -0.65
CD44-209ENST00000433892 TRAPPC2P0DI81 140 aa11□□□□□ -0.65
CD44-209ENST00000433892 TRAPPC2BP0DI82 140 aa11□□□□□ -0.65
CD44-209ENST00000433892 EVX1P49640 407 aa11□□□□□ -0.65
CD44-209ENST00000433892 ZNF136P52737 540 aa11□□□□□ -0.65
CD44-209ENST00000433892 TNFRSF17Q02223 184 aa11□□□□□ -0.65
CD44-209ENST00000433892 RGS1Q08116 209 aa11□□□□□ -0.65
CD44-209ENST00000433892 CDK10Q15131 360 aa11□□□□□ -0.65
CD44-209ENST00000433892 MAPK14Q16539 360 aa11□□□□□ -0.65
CD44-209ENST00000433892 TRMT12Q53H54 448 aaKnown RBP11□□□□□ -0.65
CD44-209ENST00000433892 TBC1D3GQ6DHY5 549 aa11□□□□□ -0.65
CD44-209ENST00000433892 TBC1D3CQ6IPX1 549 aa11□□□□□ -0.65
CD44-209ENST00000433892 PLET1Q6UQ28 207 aa11□□□□□ -0.65
CD44-209ENST00000433892 PAMR1Q6UXH9 720 aa11□□□□□ -0.65
CD44-209ENST00000433892 TMEM91Q6ZNR0 172 aa11□□□□□ -0.65
CD44-209ENST00000433892 RD3Q7Z3Z2 195 aa11□□□□□ -0.65
CD44-209ENST00000433892 ASPGQ86U10 573 aa11□□□□□ -0.65
CD44-209ENST00000433892 YAF2Q8IY57 180 aa11□□□□□ -0.65
CD44-209ENST00000433892 TBC1D3Q8IZP1 549 aaPredicted RBP11□□□□□ -0.65
CD44-209ENST00000433892 OR52N1Q8NH53 320 aa11□□□□□ -0.65
CD44-209ENST00000433892 DNAJA4Q8WW22 397 aaPredicted RBP11□□□□□ -0.65
CD44-209ENST00000433892 ARSGQ96EG1 525 aa11□□□□□ -0.65
CD44-209ENST00000433892 RNF32Q9H0A6 362 aa11□□□□□ -0.65
CD44-209ENST00000433892 CACYBPQ9HB71 228 aaKnown RBP11□□□□□ -0.65
CD44-209ENST00000433892 GDE1Q9NZC3 331 aa11□□□□□ -0.65
CD44-209ENST00000433892 OR6C2Q9NZP2 312 aa11□□□□□ -0.65
CD44-209ENST00000433892 POM121BA6NF01 834 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 C12orf71A8MTZ7 269 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 HMGN1P05114 100 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 MAP2K3P46734 347 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 CTBP2P56545 445 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 RPS15AP62244 130 aaKnown RBP10.99□□□□□ -0.65
CD44-209ENST00000433892 ACSM1Q08AH1 577 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 GPM6BQ13491 265 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 ENPP2Q13822 863 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 ZNF776Q68DI1 518 aaPredicted RBP10.99□□□□□ -0.65
CD44-209ENST00000433892 FBXO42Q6P3S6 717 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 WDR88Q6ZMY6 472 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 TMEFF1Q8IYR6 380 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 OR2L13Q8N349 312 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 ASCC1Q8N9N2 400 aaKnown RBP10.99□□□□□ -0.65
CD44-209ENST00000433892 OR4K14Q8NGD5 310 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 PFN4Q8NHR9 129 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 SDF2Q99470 211 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 COQ7Q99807 217 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 KXD1Q9BQD3 176 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 PRSS27Q9BQR3 290 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 TMEM246Q9BRR3 403 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 OR52D1Q9H346 318 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 ATP13A2Q9NQ11 1180 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 C20orf141Q9NUB4 165 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 KCMF1Q9P0J7 381 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 SIRT4Q9Y6E7 314 aaPredicted RBP10.99□□□□□ -0.65
CD44-209ENST00000433892 CLCA3PQ9Y6N3 262 aa10.99□□□□□ -0.65
CD44-209ENST00000433892 NPIPA5A0A0B4J1W7 369 aa10.98□□□□□ -0.65
CD44-209ENST00000433892 PRSS38A1L453 326 aa10.98□□□□□ -0.65
CD44-209ENST00000433892 ZNF860A6NHJ4 632 aa10.98□□□□□ -0.65
CD44-209ENST00000433892 NPIPA7E9PJI5 369 aa10.98□□□□□ -0.65
CD44-209ENST00000433892 J3QRE1 110 aa10.98□□□□□ -0.65
CD44-209ENST00000433892 P2RX6O15547 441 aa10.98□□□□□ -0.65
CD44-209ENST00000433892 HRO43593 1189 aa10.98□□□□□ -0.65
CD44-209ENST00000433892 HCN1O60741 890 aa10.98□□□□□ -0.65
CD44-209ENST00000433892 KCNJ13O60928 360 aa10.98□□□□□ -0.65
CD44-209ENST00000433892 SLC35G6P0C7Q6 338 aa10.98□□□□□ -0.65
CD44-209ENST00000433892 NPIPA8P0DM63 369 aa10.98□□□□□ -0.65
CD44-209ENST00000433892 PAICSP22234 425 aaKnown RBP10.98□□□□□ -0.65
CD44-209ENST00000433892 FXYD6P3P58550 94 aa10.98□□□□□ -0.65
CD44-209ENST00000433892 EEF1A1P68104 462 aaKnown RBP10.98□□□□□ -0.65
CD44-209ENST00000433892 RUNX2Q13950 521 aa10.98□□□□□ -0.65
CD44-209ENST00000433892 TATDN3Q17R31 274 aa10.98□□□□□ -0.65
CD44-209ENST00000433892 ARHGAP11BQ3KRB8 267 aa10.98□□□□□ -0.65
CD44-209ENST00000433892 PRR23CQ6ZRP0 262 aa10.98□□□□□ -0.65
CD44-209ENST00000433892 NR2C2APQ86WQ0 139 aa10.98□□□□□ -0.65
CD44-209ENST00000433892 CCL4L1Q8NHW4 92 aa10.98□□□□□ -0.65
CD44-209ENST00000433892 RNF170Q96K19 258 aa10.98□□□□□ -0.65
CD44-209ENST00000433892 YIPF2Q9BWQ6 316 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms