RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 NCCRP1Q6ZVX7 275 aaPredicted RBP12.48□□□□□ -0.41
VPS54-203ENST00000409558 THY1P04216 161 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 P2RY14Q15391 338 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 TMEM35AQ53FP2 167 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 TMEM64Q6YI46 380 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 UFD1Q92890 307 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 KCTD7Q96MP8 289 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 HDHD2Q9H0R4 259 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 BEX1Q9HBH7 125 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 CRNNQ9UBG3 495 aaPredicted RBP12.48□□□□□ -0.41
VPS54-203ENST00000409558 STK25O00506 426 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 IMPA2O14732 288 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 SLITRK5O94991 958 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 PSKH1P11801 424 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 MYF5P13349 255 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 ALAS2P22557 587 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 TPMTP51580 245 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 WNT4P56705 351 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 SRP54P61011 504 aaKnown RBP12.48□□□□□ -0.41
VPS54-203ENST00000409558 SUZ12Q15022 739 aaKnown RBP12.48□□□□□ -0.41
VPS54-203ENST00000409558 MFSD12Q6NUT3 480 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 SLC36A4Q6YBV0 504 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 DGAT2L6Q6ZPD8 337 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 NEIL3Q8TAT5 605 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 SLC25A19Q9HC21 320 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 FAM60AQ9NP50 221 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 POLMQ9NP87 494 aaPredicted RBP12.48□□□□□ -0.41
VPS54-203ENST00000409558 TNFRSF10DQ9UBN6 386 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 SLC17A4Q9Y2C5 497 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 RP1P56715 2156 aa12.48□□□□□ -0.41
VPS54-203ENST00000409558 PTPRSQ13332 1948 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 A0A0G2JPF8 293 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 A0A1W2PRG6 482 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 HNRNPCL2B2RXH8 293 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 HNRNPCL3B7ZW38 293 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 HNRNPCL4P0DMR1 293 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 PRAMEF17Q5VTA0 474 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 SRFBP1Q8NEF9 429 aaKnown RBP12.47□□□□□ -0.41
VPS54-203ENST00000409558 ASB15Q8WXK1 588 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 WACQ9BTA9 647 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 CNOT2Q9NZN8 540 aaKnown RBP12.47□□□□□ -0.41
VPS54-203ENST00000409558 SEC14L4Q9UDX3 406 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 ZNF346Q9UL40 294 aaKnown RBP12.47□□□□□ -0.41
VPS54-203ENST00000409558 ZNF443Q9Y2A4 671 aaPredicted RBP12.47□□□□□ -0.41
VPS54-203ENST00000409558 ARID1AO14497 2285 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 A0A1B0GVT2 93 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 CDC14CA4D256 554 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 PAHP00439 452 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 ALOX5P09917 674 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 MAZP56270 477 aaKnown RBP12.47□□□□□ -0.41
VPS54-203ENST00000409558 ZNF267Q14586 743 aaPredicted RBP12.47□□□□□ -0.41
VPS54-203ENST00000409558 LYPD4Q6UWN0 246 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 FRRS1Q6ZNA5 592 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 CNOT9Q92600 299 aaKnown RBP12.47□□□□□ -0.41
VPS54-203ENST00000409558 FOXN4Q96NZ1 517 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 TIMM29Q9BSF4 260 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 OR52D1Q9H346 318 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 FKBP14Q9NWM8 211 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 C2orf42Q9NWW7 574 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 NUFIP1Q9UHK0 495 aaKnown RBP12.47□□□□□ -0.41
VPS54-203ENST00000409558 A0A0B4J203 849 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 PPP1R3DO95685 299 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 ACP2P11117 423 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 MAGEB1P43366 347 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 ALG11Q2TAA5 492 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 C12orf73Q69YU5 71 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 ARMC6Q6NXE6 501 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 WDR88Q6ZMY6 472 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 KRT74Q7RTS7 529 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 SIRT6Q8N6T7 355 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 TMEM99Q8N816 258 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 OR4K13Q8NH42 304 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 PHOSPHO2Q8TCD6 241 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 EVA1BQ9NVM1 165 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 SOHLH2Q9NX45 425 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 KLF15Q9UIH9 416 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 CMAHPQ9Y471 501 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 OR10H1Q9Y4A9 318 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 KLK4Q9Y5K2 254 aa12.47□□□□□ -0.41
VPS54-203ENST00000409558 KIF26AQ9ULI4 1882 aaPredicted RBP12.47□□□□□ -0.41
VPS54-203ENST00000409558 OXSR1O95747 527 aaPredicted RBP12.46□□□□□ -0.41
VPS54-203ENST00000409558 ERGP11308 486 aa12.46□□□□□ -0.41
VPS54-203ENST00000409558 IL7P13232 177 aa12.46□□□□□ -0.41
VPS54-203ENST00000409558 RPL4P36578 427 aaKnown RBP12.46□□□□□ -0.41
VPS54-203ENST00000409558 CTBP2P56545 445 aa12.46□□□□□ -0.41
VPS54-203ENST00000409558 STX4Q12846 297 aa12.46□□□□□ -0.41
VPS54-203ENST00000409558 CXXC5Q7LFL8 322 aaKnown RBP12.46□□□□□ -0.41
VPS54-203ENST00000409558 TMEM163Q8TC26 289 aa12.46□□□□□ -0.41
VPS54-203ENST00000409558 FANK1Q8TC84 345 aa12.46□□□□□ -0.41
VPS54-203ENST00000409558 SLC37A2Q8TED4 501 aa12.46□□□□□ -0.41
VPS54-203ENST00000409558 CXorf51AA0A1B0GTR3 108 aa12.46□□□□□ -0.41
VPS54-203ENST00000409558 MAKP20794 623 aa12.46□□□□□ -0.41
VPS54-203ENST00000409558 IFNGR2P38484 337 aa12.46□□□□□ -0.41
VPS54-203ENST00000409558 ZNF45Q02386 682 aa12.46□□□□□ -0.41
VPS54-203ENST00000409558 AGAP7PQ5VUJ5 663 aa12.46□□□□□ -0.41
VPS54-203ENST00000409558 THSD4Q6ZMP0 1018 aa12.46□□□□□ -0.41
VPS54-203ENST00000409558 CSNK1A1LQ8N752 337 aa12.46□□□□□ -0.41
VPS54-203ENST00000409558 MFSD9Q8NBP5 474 aa12.46□□□□□ -0.41
VPS54-203ENST00000409558 PROKR2Q8NFJ6 384 aa12.46□□□□□ -0.41
VPS54-203ENST00000409558 ZMYND19Q96E35 227 aaPredicted RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms