RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 GPR65Q8IYL9 337 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 FGFRL1Q8N441 504 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 CLDN19Q8N6F1 224 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 ARFGAP1Q8N6T3 406 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 OR7G1Q8NGA0 311 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 OR1L6Q8NGR2 347 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 OR13C3Q8NGS6 347 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 OR1F12Q8NHA8 337 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 SPATA3Q8NHX4 192 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 GADD45GIP1Q8TAE8 222 aaPredicted RBP3.65□□□□□ -1.82
HMGB1-204ENST00000399489 WFIKKN2Q8TEU8 576 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 SCRN2Q96FV2 425 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 LYZL4Q96KX0 146 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 C10orf90Q96M02 699 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 PANK2Q9BZ23 570 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 TM6SF2Q9BZW4 377 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 RANBP3Q9H6Z4 567 aaPredicted RBP3.65□□□□□ -1.82
HMGB1-204ENST00000399489 SMYD3Q9H7B4 428 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 ECHDC1Q9NTX5 307 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 RNF186Q9NXI6 227 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 IL37Q9NZH6 218 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 FLRT3Q9NZU0 649 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 SENP1Q9P0U3 644 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 ZNF319Q9P2F9 582 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 TIMM22Q9Y584 194 aa3.65□□□□□ -1.82
HMGB1-204ENST00000399489 UMODL1Q5DID0 1318 aa3.65□□□□□ -1.83
HMGB1-204ENST00000399489 PTPRMP28827 1452 aa3.65□□□□□ -1.83
HMGB1-204ENST00000399489 LY6G6EA0A0G2JKS1 128 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 A0A1W2PRB8 838 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 FBLL1A6NHQ2 334 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 TRPC5OSA6NMA1 111 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 SCAMP2O15127 329 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 LATO43561 262 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 TRAPPC3O43617 180 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 PRKRAO75569 313 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 CDC123O75794 336 aaPredicted RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 OR2J3O76001 311 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 CRYABP02511 175 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 ACADSP16219 412 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 CBLP22681 906 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 PTPRGP23470 1445 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 STOMP27105 288 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 RBMS1P29558 406 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 MAT2AP31153 395 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 MATKP42679 507 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 CRYBB2P43320 205 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 TUFMP49411 452 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 SLC7A2P52569 658 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 EFNB2P52799 333 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 CDK16Q00536 496 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 HSF1Q00613 529 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 PLOD1Q02809 727 aaPredicted RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 SRYQ05066 204 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 ZP4Q12836 540 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 TAF10Q12962 218 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 C1orf61Q13536 156 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 KLF5Q13887 457 aaPredicted RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 TFDP1Q14186 410 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 PON2Q15165 354 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 MRPL23Q16540 153 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 DUSP6Q16828 381 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 ZNF284Q2VY69 593 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 SAPCD1Q5SSQ6 148 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 CELF3Q5SZQ8 465 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 ZNF562Q6V9R5 426 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 AKAP14Q86UN6 197 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 PTOV1Q86YD1 416 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 SELENOHQ8IZQ5 122 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 ICA1LQ8NDH6 482 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 OR51L1Q8NGJ5 315 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 OR9G4Q8NGQ1 327 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 MPLKIPQ8TAP9 179 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 IGFBPL1Q8WX77 278 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 SMPDL3AQ92484 453 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 SLC35B4Q969S0 331 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 UPRTQ96BW1 309 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 MTBPQ96DY7 904 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 UHRF2Q96PU4 802 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 GFM1Q96RP9 751 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 IL4I1Q96RQ9 567 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 CCM2Q9BSQ5 444 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 POLDIP3Q9BY77 421 aaKnown RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 MIS12Q9H081 205 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 ILKAPQ9H0C8 392 aaPredicted RBP3.64□□□□□ -1.83
HMGB1-204ENST00000399489 HIPK2Q9H2X6 1198 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 MAP6D1Q9H9H5 199 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 MYOZ2Q9NPC6 264 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 ZNF302Q9NR11 478 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 STARD5Q9NSY2 213 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 SLC38A7Q9NVC3 462 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 MED17Q9NVC6 651 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 PHF11Q9UIL8 331 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 SIX4Q9UIU6 781 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 IKZF2Q9UKS7 526 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 STUB1Q9UNE7 303 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 STARD10Q9Y365 291 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 TIMM10BQ9Y5J6 103 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 MAD1L1Q9Y6D9 718 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 UHRF1BP1LA0JNW5 1464 aa3.64□□□□□ -1.83
HMGB1-204ENST00000399489 TEX14Q8IWB6 1497 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms