RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 ARHGAP19Q14CB8 494 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 RPS26P11Q5JNZ5 115 aaPredicted RBP12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 PLCXD3Q63HM9 321 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 FIBINQ8TAL6 211 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 ZFAND1Q8TCF1 268 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 SDSLQ96GA7 329 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 CRB3Q9BUF7 120 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 BIN3Q9NQY0 253 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 ZNF225Q9UK10 706 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 CACNG2Q9Y698 323 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 MON2Q7Z3U7 1717 aa12.09□□□□□ -0.47
CCDC88C-204ENST00000389857 GAAP10253 952 aa12.08□□□□□ -0.47
CCDC88C-204ENST00000389857 GNB3P16520 340 aa12.08□□□□□ -0.47
CCDC88C-204ENST00000389857 NKPD1Q17RQ9 610 aa12.08□□□□□ -0.47
CCDC88C-204ENST00000389857 CYP4V2Q6ZWL3 525 aaPredicted RBP12.08□□□□□ -0.47
CCDC88C-204ENST00000389857 DEDD2Q8WXF8 326 aa12.08□□□□□ -0.47
CCDC88C-204ENST00000389857 SACM1LQ9NTJ5 587 aa12.08□□□□□ -0.47
CCDC88C-204ENST00000389857 MYEF2Q9P2K5 600 aaKnown RBP12.08□□□□□ -0.47
CCDC88C-204ENST00000389857 ANKMY1Q9P2S6 941 aa12.08□□□□□ -0.47
CCDC88C-204ENST00000389857 UBFD1O14562 309 aaKnown RBP12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 HSD17B1P14061 328 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 POU3F2P20265 443 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 DRD1P21728 446 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 CSNK1A1P48729 337 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 PCBD1P61457 104 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 MRPS10P82664 201 aaKnown RBP12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 OR13J1Q8NGT2 312 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 DPH1Q9BZG8 443 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 KIF25Q9UIL4 384 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 RNF212BA8MTL3 300 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 B4DXG7 233 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 SRPX2O60687 465 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 TP53P04637 393 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 IQCF3P0C7M6 154 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 EFNA3P52797 238 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 SCAPQ12770 1279 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 RGNQ15493 299 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 APCDD1Q8J025 514 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 OR4K5Q8NGD3 323 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 SYNPRQ8TBG9 265 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 CIDECQ96AQ7 238 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 SLC12A9Q9BXP2 914 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 PIAS3Q9Y6X2 628 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 HMGCLP35914 325 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 KEAP1Q14145 624 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 DCST2Q5T1A1 773 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 CLECL1Q8IZS7 167 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 VWA5B2Q8N398 1253 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 ZNF808Q8N4W9 903 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 SENP5Q96HI0 755 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 POLHQ9Y253 713 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 FBXO7Q9Y3I1 522 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 SPO11Q9Y5K1 396 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 H3BML4 177 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 SULT2B1O00204 365 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 RNASET2O00584 256 aaKnown RBP12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 NR4A2P43354 598 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 ZNF791Q3KP31 576 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 NADSYN1Q6IA69 706 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 OR5D16Q8NGK9 328 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 C7orf43Q8WVR3 580 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 PITHD1Q9GZP4 211 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 RPS10P5Q9NQ39 176 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 ARMC1Q9NVT9 282 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 LYRM1O43325 122 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 SNAI1O95863 264 aaPredicted RBP12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 GABRR1P24046 479 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 DYRK1AQ13627 763 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 FCRLBQ6BAA4 426 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 ELP2Q6IA86 826 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 LCTLQ6UWM7 567 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 MEX3BQ6ZN04 569 aaKnown RBP12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 KDM1BQ8NB78 822 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 HAS2Q92819 552 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 NLKQ9UBE8 527 aa12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 TESQ9UGI8 421 aaKnown RBP12.08□□□□□ -0.48
CCDC88C-204ENST00000389857 ZNF254O75437 659 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 OR7A5Q15622 319 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 PROX2Q3B8N5 592 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 DOK4Q8TEW6 326 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 FAM3CQ92520 227 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 MAL2Q969L2 176 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 INTS14Q96SY0 518 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 NMNAT1Q9HAN9 279 aaPredicted RBP12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 MICAL3Q7RTP6 2002 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 KDM4FA0A1W2PPD8 638 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 PRAMEF26H0Y7S4 382 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 SPDEFO95238 335 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 CERS1P27544 350 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 ETV5P41161 510 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 SELENOWP63302 87 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 PEA15Q15121 130 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 IQCF1Q8N6M8 205 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 SUMF2Q8NBJ7 301 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 BTNL2Q9UIR0 455 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 RHBDD3Q9Y3P4 386 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 GPR137BO60478 399 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 SDC3O75056 442 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 PKLRP30613 574 aa12.07□□□□□ -0.48
CCDC88C-204ENST00000389857 RGS6P49758 472 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms