RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 PLATP00750 562 aa10.77□□□□□ -0.68
PTPRF-203ENST00000372407 SYPP08247 313 aa10.77□□□□□ -0.68
PTPRF-203ENST00000372407 AKR1C4P17516 323 aa10.77□□□□□ -0.68
PTPRF-203ENST00000372407 CERS1P27544 350 aa10.77□□□□□ -0.68
PTPRF-203ENST00000372407 SLC26A5P58743 744 aa10.77□□□□□ -0.68
PTPRF-203ENST00000372407 ZNF691Q5VV52 312 aa10.77□□□□□ -0.68
PTPRF-203ENST00000372407 MTFR2Q6P444 385 aa10.77□□□□□ -0.68
PTPRF-203ENST00000372407 ZNF534Q76KX8 674 aa10.77□□□□□ -0.68
PTPRF-203ENST00000372407 CLEC14AQ86T13 490 aa10.77□□□□□ -0.68
PTPRF-203ENST00000372407 GTPBP8Q8N3Z3 284 aaPredicted RBP10.77□□□□□ -0.68
PTPRF-203ENST00000372407 ZNF480Q8WV37 535 aa10.77□□□□□ -0.68
PTPRF-203ENST00000372407 ELMOD3Q96FG2 381 aa10.77□□□□□ -0.68
PTPRF-203ENST00000372407 ZNF486Q96H40 463 aaPredicted RBP10.77□□□□□ -0.68
PTPRF-203ENST00000372407 SLAMF8Q9P0V8 285 aa10.77□□□□□ -0.68
PTPRF-203ENST00000372407 AK6Q9Y3D8 172 aaKnown RBP10.77□□□□□ -0.68
PTPRF-203ENST00000372407 LOC105369274A0A096LPK9 316 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 OR2T1O43869 369 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 SLC22A5O76082 557 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 ALPLP05186 524 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 ITGB7P26010 798 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 AOAHP28039 575 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 PBX2P40425 430 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 CTSCP53634 463 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 MRPS10P82664 201 aaKnown RBP10.77□□□□□ -0.69
PTPRF-203ENST00000372407 TP53I3Q53FA7 332 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 ZC3H14Q6PJT7 736 aaKnown RBP10.77□□□□□ -0.69
PTPRF-203ENST00000372407 NOXA1Q86UR1 476 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 OR4N4Q8N0Y3 316 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 OR9A2Q8NGT5 310 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 OR5W2Q8NH69 310 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 SYT3Q9BQG1 590 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 EIF5A2Q9GZV4 153 aaKnown RBP10.77□□□□□ -0.69
PTPRF-203ENST00000372407 ATXN7L1Q9ULK2 861 aaPredicted RBP10.77□□□□□ -0.69
PTPRF-203ENST00000372407 DNMT3AQ9Y6K1 912 aaPredicted RBP10.77□□□□□ -0.69
PTPRF-203ENST00000372407 GPR39O43194 453 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 HRGP04196 525 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 PNMTP11086 282 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 GABRB3P28472 473 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 ZNF616Q08AN1 781 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 GRIN2CQ14957 1233 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 SLC5A12Q1EHB4 618 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 ATAD3CQ5T2N8 411 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 RAET1LQ5VY80 246 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.77□□□□□ -0.696e-7■■■■□ 23.2
PTPRF-203ENST00000372407 SFXN5Q8TD22 340 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 ZNF587Q96SQ5 575 aaPredicted RBP10.77□□□□□ -0.69
PTPRF-203ENST00000372407 TREX2Q9BQ50 279 aaPredicted RBP10.77□□□□□ -0.69
PTPRF-203ENST00000372407 SYNPO2LQ9H987 977 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 APMAPQ9HDC9 416 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 UBE2J1Q9Y385 318 aaPredicted RBP10.77□□□□□ -0.69
PTPRF-203ENST00000372407 IER3IP1Q9Y5U9 82 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 OR52A4PA6NMU1 304 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 ACOT7O00154 380 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 RAB3DO95716 219 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 FBXO45P0C2W1 286 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 ATXN1LP0C7T5 689 aaKnown RBP10.77□□□□□ -0.69
PTPRF-203ENST00000372407 HNRNPA2B1P22626 353 aaKnown RBP10.77□□□□□ -0.69
PTPRF-203ENST00000372407 CSNK1DP48730 415 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 S100A12P80511 92 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 PCGF3Q3KNV8 242 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 ACSM3Q53FZ2 586 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 KCTD11Q693B1 232 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 PAQR9Q6ZVX9 377 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 DPPA4Q7L190 304 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 KIAA1143Q96AT1 154 aaPredicted RBP10.77□□□□□ -0.69
PTPRF-203ENST00000372407 DTD2Q96FN9 168 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 ALOXE3Q9BYJ1 711 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 MMP28Q9H239 520 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 SACM1LQ9NTJ5 587 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 ZFP57Q9NU63 452 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 SCML1Q9UN30 329 aa10.77□□□□□ -0.69
PTPRF-203ENST00000372407 EDIL3O43854 480 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 TRA2BP62995 288 aaKnown RBP10.76□□□□□ -0.69
PTPRF-203ENST00000372407 TDGQ13569 410 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 ELOAQ14241 798 aaKnown RBP10.76□□□□□ -0.69
PTPRF-203ENST00000372407 MARCH8Q5T0T0 291 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 AGAP6Q5VW22 663 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 HTR3DQ70Z44 454 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 WDR53Q7Z5U6 358 aaPredicted RBP10.76□□□□□ -0.69
PTPRF-203ENST00000372407 TMEM151BQ8IW70 566 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 DIO2Q92813 273 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 AGAP4Q96P64 663 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 B4GALT7Q9UBV7 327 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 TAF1LQ8IZX4 1826 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 CLDN24A6NM45 220 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 ARPC5O15511 151 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 DNAJB6O75190 326 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 SEMA4FO95754 770 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 PROS1P07225 676 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 THEGLP0DJG4 465 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 CRABP1P29762 137 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 TNFSF8P32971 234 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 ADRA1AP35348 466 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 TAP2Q03519 686 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 KIR2DS3Q14952 304 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 DEFB110Q30KQ9 67 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 ZNF704Q6ZNC4 412 aaPredicted RBP10.76□□□□□ -0.69
PTPRF-203ENST00000372407 MFSD6LQ8IWD5 586 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 ZNF619Q8N2I2 560 aa10.76□□□□□ -0.69
PTPRF-203ENST00000372407 OR5H2Q8NGV7 314 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms