RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 DOHHQ9BU89 302 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 LHX6Q9UPM6 363 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 SMG1Q96Q15 3661 aaKnown RBP20.29■□□□□ 0.84
SDC3-202ENST00000339394 A0A0G2JMM0 328 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 A0A1W2PPB8 328 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 A0A1W2PRS3 328 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 C2orf72A6NCS6 295 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 KIR3DP1A8MWS1 328 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 ADAM10O14672 748 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 HSD17B1P14061 328 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 ETS2P15036 469 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 TCN1P20061 433 aaPredicted RBP20.29■□□□□ 0.84
SDC3-202ENST00000339394 GAS1P54826 345 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 PCBP3P57721 371 aaKnown RBP20.29■□□□□ 0.84
SDC3-202ENST00000339394 PLEKHN1Q494U1 663 aaPredicted RBP20.29■□□□□ 0.84
SDC3-202ENST00000339394 NADK2Q4G0N4 442 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 TBCELQ5QJ74 424 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 SLC30A6Q6NXT4 461 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 ZNF614Q8N883 585 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 NTNG2Q96CW9 530 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 THTPAQ9BU02 230 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 OSBPL11Q9BXB4 747 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 SUCOQ9UBS9 1254 aaKnown RBP20.29■□□□□ 0.84
SDC3-202ENST00000339394 PRPF19Q9UMS4 504 aaKnown RBP20.29■□□□□ 0.84
SDC3-202ENST00000339394 KLF13Q9Y2Y9 288 aaPredicted RBP20.29■□□□□ 0.84
SDC3-202ENST00000339394 DTNAQ9Y4J8 743 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 SCO2O43819 266 aa20.28■□□□□ 0.84
SDC3-202ENST00000339394 SNX4O95219 450 aa20.28■□□□□ 0.84
SDC3-202ENST00000339394 RPS4Y1P22090 263 aaKnown RBP20.28■□□□□ 0.84
SDC3-202ENST00000339394 MSX2P35548 267 aaPredicted RBP20.28■□□□□ 0.84
SDC3-202ENST00000339394 DNASE1L1P49184 302 aa20.28■□□□□ 0.84
SDC3-202ENST00000339394 CLK3P49761 638 aaKnown RBP20.28■□□□□ 0.84
SDC3-202ENST00000339394 RNF144AP50876 292 aaPredicted RBP20.28■□□□□ 0.84
SDC3-202ENST00000339394 KCNJ2P63252 427 aa20.28■□□□□ 0.84
SDC3-202ENST00000339394 SPATS1Q496A3 300 aa20.28■□□□□ 0.84
SDC3-202ENST00000339394 INTS11Q5TA45 600 aaKnown RBP20.28■□□□□ 0.84
SDC3-202ENST00000339394 SLC6A19Q695T7 634 aa20.28■□□□□ 0.84
SDC3-202ENST00000339394 PEX5LQ8IYB4 626 aa20.28■□□□□ 0.84
SDC3-202ENST00000339394 TNRC6AQ8NDV7 1962 aaKnown RBP20.28■□□□□ 0.84
SDC3-202ENST00000339394 A0A1W2PQD3 144 aa20.27■□□□□ 0.84
SDC3-202ENST00000339394 KLRC4-KLRK1H3BQV0 150 aa20.27■□□□□ 0.84
SDC3-202ENST00000339394 PEX1O43933 1283 aa20.27■□□□□ 0.84
SDC3-202ENST00000339394 ANGPTL1O95841 491 aa20.27■□□□□ 0.84
SDC3-202ENST00000339394 IL7RP16871 459 aa20.27■□□□□ 0.84
SDC3-202ENST00000339394 HTR1EP28566 365 aa20.27■□□□□ 0.84
SDC3-202ENST00000339394 NCALDP61601 193 aa20.27■□□□□ 0.84
SDC3-202ENST00000339394 INPP5JQ15735 1006 aaPredicted RBP20.27■□□□□ 0.84
SDC3-202ENST00000339394 PACS2Q86VP3 889 aa20.27■□□□□ 0.84
SDC3-202ENST00000339394 KRT73Q86Y46 540 aa20.27■□□□□ 0.84
SDC3-202ENST00000339394 TNIP2Q8NFZ5 429 aa20.27■□□□□ 0.84
SDC3-202ENST00000339394 OR52P1PQ8NH57 321 aa20.27■□□□□ 0.84
SDC3-202ENST00000339394 OIT3Q8WWZ8 545 aa20.27■□□□□ 0.84
SDC3-202ENST00000339394 CLPTM1LQ96KA5 538 aa20.27■□□□□ 0.84
SDC3-202ENST00000339394 ZNF607Q96SK3 696 aa20.27■□□□□ 0.84
SDC3-202ENST00000339394 EGFL7Q9UHF1 273 aa20.27■□□□□ 0.84
SDC3-202ENST00000339394 WIF1Q9Y5W5 379 aa20.27■□□□□ 0.84
SDC3-202ENST00000339394 GPC6Q9Y625 555 aaPredicted RBP20.27■□□□□ 0.84
SDC3-202ENST00000339394 CLDN24A6NM45 220 aa20.26■□□□□ 0.83
SDC3-202ENST00000339394 C17orf51A8MQB3 221 aa20.26■□□□□ 0.83
SDC3-202ENST00000339394 M0QX08 132 aa20.26■□□□□ 0.83
SDC3-202ENST00000339394 GSC2O15499 205 aa20.26■□□□□ 0.83
SDC3-202ENST00000339394 NDUFB5O43674 189 aa20.26■□□□□ 0.83
SDC3-202ENST00000339394 DNAJC8O75937 253 aaPredicted RBP20.26■□□□□ 0.83
SDC3-202ENST00000339394 SORBS2O94875 1100 aaKnown RBP20.26■□□□□ 0.83
SDC3-202ENST00000339394 DBIP07108 87 aaKnown RBP20.26■□□□□ 0.83
SDC3-202ENST00000339394 CD226Q15762 336 aa20.26■□□□□ 0.83
SDC3-202ENST00000339394 CCDC80Q76M96 950 aa20.26■□□□□ 0.83
SDC3-202ENST00000339394 TEX19Q8NA77 164 aa20.26■□□□□ 0.83
SDC3-202ENST00000339394 GATSQ8NAP1 163 aa20.26■□□□□ 0.83
SDC3-202ENST00000339394 OR2M7Q8NG81 312 aa20.26■□□□□ 0.83
SDC3-202ENST00000339394 PNPLA2Q96AD5 504 aa20.26■□□□□ 0.83
SDC3-202ENST00000339394 FRMD6Q96NE9 622 aa20.26■□□□□ 0.83
SDC3-202ENST00000339394 FAM173AQ9BQD7 235 aa20.26■□□□□ 0.83
SDC3-202ENST00000339394 LRMDAQ9H2I8 198 aa20.26■□□□□ 0.83
SDC3-202ENST00000339394 PINLYPA6NC86 204 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 SERINC4A6NH21 518 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 H3BNH8 94 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 TRIM3O75382 744 aaPredicted RBP20.25■□□□□ 0.83
SDC3-202ENST00000339394 PDE5AO76074 875 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 FXNQ16595 210 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 OR5M10Q6IEU7 315 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 PNPLA5Q7Z6Z6 429 aaPredicted RBP20.25■□□□□ 0.83
SDC3-202ENST00000339394 PATL1Q86TB9 770 aaKnown RBP20.25■□□□□ 0.83
SDC3-202ENST00000339394 VRK2Q86Y07 508 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 PHOSPHO1Q8TCT1 267 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 DUSP19Q8WTR2 217 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 FIG4Q92562 907 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 RSPO3Q9BXY4 272 aaPredicted RBP20.25■□□□□ 0.83
SDC3-202ENST00000339394 CADM1Q9BY67 442 aaKnown RBP20.25■□□□□ 0.83
SDC3-202ENST00000339394 LUZP4Q9P127 313 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 IFT52Q9Y366 437 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 CXCR6O00574 342 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 GSTA4O15217 222 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 SERPINB7O75635 380 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 PDE9AO76083 593 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 MFN2O95140 757 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 PABPC4LP0CB38 370 aaKnown RBP20.25■□□□□ 0.83
SDC3-202ENST00000339394 NID1P14543 1247 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 GGT1P19440 569 aa20.25■□□□□ 0.83
SDC3-202ENST00000339394 KDELR2P33947 212 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms