RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 POLE3Q9NRF9 147 aa14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 P2RX2Q9UBL9 471 aa14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 SH3BGRL2Q9UJC5 107 aa14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 LIPT1Q9Y234 373 aa14.47□□□□□ -0.09
CCDC28A-201ENST00000332797 RP1L1Q8IWN7 2480 aaPredicted RBP14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 TRBV5-3A0A0A0MS03 114 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 TRGV8A0A0C4DH27 118 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 NPIPB9F8W1W9 429 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 FBP2O00757 339 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 SLC22A2O15244 555 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 KIAA0513O60268 411 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 SUSD5O60279 629 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 TNFRSF21O75509 655 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 CHRM4P08173 479 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 NR2F1P10589 423 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 TCEA1P23193 301 aaKnown RBP14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 PPIBP23284 216 aaKnown RBP14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 ADSLP30566 484 aaPredicted RBP14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 PTGS2P35354 604 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 RGNQ15493 299 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 CD226Q15762 336 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 MMEL1Q495T6 779 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 KLHL26Q53HC5 615 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 WIPI1Q5MNZ9 446 aaPredicted RBP14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 PDZK1Q5T2W1 519 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 C1QL3Q5VWW1 255 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 FRRS1Q6ZNA5 592 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 FADS6Q8N9I5 356 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 OR2M3Q8NG83 312 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 OR14L1PQ8NHC6 308 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 NEIL3Q8TAT5 605 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 PHOSPHO1Q8TCT1 267 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 SH3YL1Q96HL8 342 aaPredicted RBP14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 TNFRSF10DQ9UBN6 386 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 RELNP78509 3460 aa14.46□□□□□ -0.09
CCDC28A-201ENST00000332797 FLNCQ14315 2725 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 C15orf38-AP3S2A0A0A6YYH1 394 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 CENPVL1A0A0U1RR11 272 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 LOC100653049A0A140TA62 436 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 A0A1B0GVC2 190 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 NPIPA2E9PIF3 369 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 NPIPA3F8WFD2 350 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 H3BNH8 94 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 AQP7O14520 342 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 KRT34O76011 436 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 BCHEP06276 602 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 TPOP07202 933 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 ENDOUP21128 410 aaKnown RBP14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 DPP4P27487 766 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 SRD5A2P31213 254 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 CASP6P55212 293 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 CHRNEQ04844 493 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 FADDQ13158 208 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 REP15Q6BDI9 236 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 LRRC74BQ6ZQY2 392 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 HMGN2P46Q86SG4 172 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 MISPQ8IVT2 679 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 ZNF619Q8N2I2 560 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 CGREF1Q99674 301 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 CPPED1Q9BRF8 314 aaPredicted RBP14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 OR2B2Q9GZK3 357 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 IKZF5Q9H5V7 419 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 PTGES2Q9H7Z7 377 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 HHATLQ9HCP6 504 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 THUMPD1Q9NXG2 353 aaKnown RBP14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 TAS2R10Q9NYW0 307 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 SPRR3Q9UBC9 169 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 KCNE5Q9UJ90 142 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 TINAGQ9UJW2 476 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 CORO2BQ9UQ03 480 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 ZNF835Q9Y2P0 537 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 SLC6A5Q9Y345 797 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 DTNAQ9Y4J8 743 aa14.45□□□□□ -0.1
CCDC28A-201ENST00000332797 IGLV3-32A0A0A0MS00 114 aa14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 TMEM247A6NEH6 219 aa14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 BBIP1A8MTZ0 92 aa14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 EVPLLA8MZ36 301 aa14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 GTPBP1O00178 669 aaKnown RBP14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 MRASO14807 208 aa14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 UGT2B17O75795 530 aa14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 GUSBP08236 651 aa14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 STSP08842 583 aa14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 NUDT7P0C024 238 aa14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 DSCR4P56555 118 aaPredicted RBP14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 CYLC2Q14093 348 aaPredicted RBP14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 CAPRIN1Q14444 709 aaKnown RBP14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 ZNF141Q15928 474 aa14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 C3AR1Q16581 482 aa14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 TRMT5Q32P41 509 aaKnown RBP14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 RUNDC3AQ59EK9 446 aa14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 COQ5Q5HYK3 327 aa14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 Q6ZPB1 254 aaPredicted RBP14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 CD163Q86VB7 1156 aa14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 ZGRF1Q86YA3 2104 aa14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 POU5F2Q8N7G0 328 aa14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 FAM57AQ8TBR7 257 aa14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 C1GALT1C1Q96EU7 318 aa14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 CCDC106Q9BWC9 280 aa14.44□□□□□ -0.1
CCDC28A-201ENST00000332797 TRIM8Q9BZR9 551 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms