RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 ZNF79Q15937 498 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 TMEM81Q6P7N7 255 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 TMPRSS11AQ6ZMR5 421 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 RNF44Q7L0R7 432 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 C6orf120Q7Z4R8 191 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 KRT73Q86Y46 540 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 PTP4A1Q93096 173 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 ZBED6CLQ96FA7 236 aaPredicted RBP12.19□□□□□ -0.46
CPNE1-201ENST00000317677 Q96MT0 163 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 SMURF1Q9HCE7 757 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 NEUROD4Q9HD90 331 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 FAM60AQ9NP50 221 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 KCMF1Q9P0J7 381 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 PSORS1C1Q9UIG5 152 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 FBXO4Q9UKT5 387 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 ENTPD2Q9Y5L3 495 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 U3KQV3 271 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 SPAG17Q6Q759 2223 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 PCDH15Q96QU1 1955 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 H0YGG7 62 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 ADAM11O75078 769 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 RECKO95980 971 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 C8orf89P0DMQ9 161 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 RRASP10301 218 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 F8A1P23610 371 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 ARF3P61204 181 aaPredicted RBP12.19□□□□□ -0.46
CPNE1-201ENST00000317677 SNRPD2P62316 118 aaKnown RBP12.19□□□□□ -0.46
CPNE1-201ENST00000317677 POLR2GP62487 172 aaKnown RBP eCLIP12.19□□□□□ -0.46
CPNE1-201ENST00000317677 RUNX2Q13950 521 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 LAPTM4AQ15012 233 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 TEAD4Q15561 434 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 ZNF528Q3MIS6 628 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 SLC48A1Q6P1K1 146 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 TNFAIP8L2Q6P589 184 aaPredicted RBP12.19□□□□□ -0.46
CPNE1-201ENST00000317677 PRSS41Q7RTY9 318 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 PM20D2Q8IYS1 436 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 SRFBP1Q8NEF9 429 aaKnown RBP12.19□□□□□ -0.46
CPNE1-201ENST00000317677 DUSP18Q8NEJ0 188 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 LMX1AQ8TE12 382 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 UBASH3BQ8TF42 649 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 AKAP1Q92667 903 aaKnown RBP eCLIP12.19□□□□□ -0.46
CPNE1-201ENST00000317677 UFD1Q92890 307 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 TPD52L3Q96J77 140 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 KLHL15Q96M94 604 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 ZNF681Q96N22 645 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 ZFYVE21Q9BQ24 234 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 RHNO1Q9BSD3 238 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 COPS4Q9BT78 406 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 FAIM2Q9BWQ8 316 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 PCED1AQ9H1Q7 454 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 OR51E2Q9H255 320 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 SLC6A15Q9H2J7 730 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 IFT46Q9NQC8 304 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 PTTG3PQ9NZH4 202 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 POMT2Q9UKY4 750 aa12.19□□□□□ -0.46
CPNE1-201ENST00000317677 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 HMGN4O00479 90 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 ERAL1O75616 437 aaKnown RBP12.18□□□□□ -0.46
CPNE1-201ENST00000317677 CYP7B1O75881 506 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 FABP3P05413 133 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 TPOP07202 933 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 SLC35G6P0C7Q6 338 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 SP9P0CG40 484 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 ST6GAL1P15907 406 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 KIR2DL3P43628 341 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 CCT3P49368 545 aaKnown RBP12.18□□□□□ -0.46
CPNE1-201ENST00000317677 NCBP2P52298 156 aaKnown RBP eCLIP12.18□□□□□ -0.46
CPNE1-201ENST00000317677 NXPH1P58417 271 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 IL1RL1Q01638 556 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 ZNF273Q14593 569 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 CEBPEQ15744 281 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 SMN1Q16637 294 aaKnown RBP12.18□□□□□ -0.46
CPNE1-201ENST00000317677 COL28A1Q2UY09 1125 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 GLYR1Q49A26 553 aaPredicted RBP12.18□□□□□ -0.46
CPNE1-201ENST00000317677 RPS26P11Q5JNZ5 115 aaPredicted RBP12.18□□□□□ -0.46
CPNE1-201ENST00000317677 GPR139Q6DWJ6 353 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 CEACAM20Q6UY09 585 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 AHSA2Q719I0 299 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 IQCHQ86VS3 1027 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 COMMD7Q86VX2 200 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 TMEFF1Q8IYR6 380 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 GHDCQ8N2G8 530 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 ARL14Q8N4G2 192 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 CAMKK1Q8N5S9 505 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 OR52H1Q8NGJ2 320 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 RAB8BQ92930 207 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 FBXW5Q969U6 566 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 KIAA1143Q96AT1 154 aaPredicted RBP12.18□□□□□ -0.46
CPNE1-201ENST00000317677 C11orf54Q9H0W9 315 aaPredicted RBP12.18□□□□□ -0.46
CPNE1-201ENST00000317677 ZNF224Q9NZL3 707 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 LOC100506127A0A0U1RQW1 187 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 TUBAL3A6NHL2 446 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 ZNF98A6NK75 572 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 KIAA0513O60268 411 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 MITFO75030 526 aaPredicted RBP12.18□□□□□ -0.46
CPNE1-201ENST00000317677 PTP4A3O75365 173 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 CDK1P06493 297 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 FEN1P39748 380 aaKnown RBP12.18□□□□□ -0.46
CPNE1-201ENST00000317677 SELENOWP63302 87 aa12.18□□□□□ -0.46
CPNE1-201ENST00000317677 COX10Q12887 443 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms