RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 QSOX2Q6ZRP7 698 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 RABEPKQ7Z6M1 372 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 OR5M3Q8NGP4 307 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 ZNF721Q8TF20 911 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 SIDT1Q9NXL6 827 aaKnown RBP15.24■□□□□ 0.03
USP4-201ENST00000265560 SATB2Q9UPW6 733 aa15.24■□□□□ 0.03
USP4-201ENST00000265560 H3BSA7 217 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 GRK6P43250 576 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 NR0B1P51843 470 aaKnown RBP15.23■□□□□ 0.03
USP4-201ENST00000265560 SQSTM1Q13501 440 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 WDR88Q6ZMY6 472 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 RBM44Q6ZP01 1051 aaKnown RBP15.23■□□□□ 0.03
USP4-201ENST00000265560 CCDC103Q8IW40 242 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 NRMQ8IXM6 262 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 MORN4Q8NDC4 146 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 SLC41A3Q96GZ6 507 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 A0A1W2PRQ8 180 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 SLC1A7O00341 560 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 DGCR6Q14129 220 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 CLEC12AQ5QGZ9 265 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 DHRS4L2Q6PKH6 230 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 DNAJA3Q96EY1 480 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 HRASLS5Q96KN8 279 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 KLHDC3Q9BQ90 382 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 EGLN3Q9H6Z9 239 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 MKKSQ9NPJ1 570 aaPredicted RBP15.23■□□□□ 0.03
USP4-201ENST00000265560 CEP250Q9BV73 2442 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 SYT5O00445 386 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 CDX4O14627 284 aaPredicted RBP15.23■□□□□ 0.03
USP4-201ENST00000265560 SLITRK5O94991 958 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 HTR1AP08908 422 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 ANKRD34CP0C6C1 535 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 ZNF528Q3MIS6 628 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 RRM2BQ7LG56 351 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 C9orf40Q8IXQ3 194 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 PARP8Q8N3A8 854 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 CADM2Q8N3J6 435 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 APH1BQ8WW43 257 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 DHRS1Q96LJ7 313 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 FUZQ9BT04 418 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 UCK2Q9BZX2 261 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 SAP130Q9H0E3 1048 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 POLR1BQ9H9Y6 1135 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 SRPK3Q9UPE1 567 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 MMACHCQ9Y4U1 282 aa15.23■□□□□ 0.03
USP4-201ENST00000265560 MEN1O00255 615 aa15.22■□□□□ 0.03
USP4-201ENST00000265560 FAAHO00519 579 aa15.22■□□□□ 0.03
USP4-201ENST00000265560 WBP4O75554 376 aaKnown RBP15.22■□□□□ 0.03
USP4-201ENST00000265560 HEXBP07686 556 aa15.22■□□□□ 0.03
USP4-201ENST00000265560 MSL3P1P0C860 447 aa15.22■□□□□ 0.03
USP4-201ENST00000265560 UGT2B15P54855 530 aa15.22■□□□□ 0.03
USP4-201ENST00000265560 MLLT10P55197 1068 aa15.22■□□□□ 0.03
USP4-201ENST00000265560 DCDP81605 110 aaKnown RBP15.22■□□□□ 0.03
USP4-201ENST00000265560 MAD2L1BPQ15013 274 aaPredicted RBP15.22■□□□□ 0.03
USP4-201ENST00000265560 KCTD8Q6ZWB6 473 aa15.22■□□□□ 0.03
USP4-201ENST00000265560 APOL4Q9BPW4 351 aa15.22■□□□□ 0.03
USP4-201ENST00000265560 GABARAPL3Q9BY60 117 aa15.22■□□□□ 0.03
USP4-201ENST00000265560 REV1Q9UBZ9 1251 aa15.22■□□□□ 0.03
USP4-201ENST00000265560 MASP2O00187 686 aa15.22■□□□□ 0.03
USP4-201ENST00000265560 NTN3O00634 580 aaPredicted RBP15.22■□□□□ 0.03
USP4-201ENST00000265560 DUSP3P51452 185 aaPredicted RBP15.22■□□□□ 0.03
USP4-201ENST00000265560 MVKQ03426 396 aa15.22■□□□□ 0.03
USP4-201ENST00000265560 OR1Q1Q15612 314 aa15.22■□□□□ 0.03
USP4-201ENST00000265560 ELAVL1Q15717 326 aaKnown RBP15.22■□□□□ 0.03
USP4-201ENST00000265560 KCTD21Q4G0X4 260 aa15.22■□□□□ 0.03
USP4-201ENST00000265560 APOOLQ6UXV4 268 aa15.22■□□□□ 0.03
USP4-201ENST00000265560 PLA2G12AQ9BZM1 189 aa15.22■□□□□ 0.03
USP4-201ENST00000265560 TRIM45Q9H8W5 580 aaPredicted RBP15.22■□□□□ 0.03
USP4-201ENST00000265560 ERVK-18Q9QC07 812 aa15.22■□□□□ 0.03
USP4-201ENST00000265560 ZFHX4Q86UP3 3567 aa15.22■□□□□ 0.03
USP4-201ENST00000265560 C2orf92A0A1B0GVN3 265 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 REM1O75628 298 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 IGKV3-11P04433 115 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 KRT20P35900 424 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 CCR4P51679 360 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 CRISP1P54107 249 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 SLC38A4Q969I6 547 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 NMD3Q96D46 503 aaKnown RBP15.21■□□□□ 0.03
USP4-201ENST00000265560 RTN4RQ9BZR6 473 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 ATP13A2Q9NQ11 1180 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 SELENONQ9NZV5 590 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 GVINP1Q7Z2Y8 2422 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 BLACEA4D250 179 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 RPS4Y1P22090 263 aaKnown RBP15.21■□□□□ 0.03
USP4-201ENST00000265560 RORAP35398 523 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 ST3GAL3Q11203 375 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 PMS2P3Q13401 168 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 KEAP1Q14145 624 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 AGBL5Q8NDL9 886 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 PFN4Q8NHR9 129 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 SH3YL1Q96HL8 342 aaPredicted RBP15.21■□□□□ 0.03
USP4-201ENST00000265560 IMPAD1Q9NX62 359 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 ZNF226Q9NYT6 803 aa15.21■□□□□ 0.03
USP4-201ENST00000265560 A0A087WXM4 84 aa15.21■□□□□ 0.02
USP4-201ENST00000265560 OIP5O43482 229 aa15.21■□□□□ 0.02
USP4-201ENST00000265560 DYRK3O43781 588 aa15.21■□□□□ 0.02
USP4-201ENST00000265560 CH25HO95992 272 aa15.21■□□□□ 0.02
USP4-201ENST00000265560 NR1H2P55055 460 aa15.21■□□□□ 0.02
USP4-201ENST00000265560 AHSA2Q719I0 299 aa15.21■□□□□ 0.02
USP4-201ENST00000265560 ULBP3Q9BZM4 244 aa15.21■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms