RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PRAMEF7Q5VXH5 474 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 GDF6Q6KF10 455 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 KCNK13Q9HB14 408 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 SPATA31A1Q5TZJ5 1347 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 SLC16A5O15375 505 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 HTR3AP46098 478 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 PLCXD3Q63HM9 321 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 TSPYL5Q86VY4 417 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 SYNPRQ8TBG9 265 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 ADIPOR1Q96A54 375 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 FAM46AQ96IP4 442 aaKnown RBP13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 AIG1Q9NVV5 245 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 SGSHP51688 502 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 OGFOD3Q6PK18 319 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 ENPP6Q6UWR7 440 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 ZBTB8AQ96BR9 441 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 SOX17Q9H6I2 414 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 DCAF16Q9NXF7 216 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 OARD1Q9Y530 152 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 SH2D7A6NKC9 451 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 TRAPPC2LH3BP13 241 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 MPIG6BO95866 241 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 ADH4P08319 380 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 CRHBPP24387 322 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 LAP3P28838 519 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 LPCAT3Q6P1A2 487 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 TPRG1Q6ZUI0 275 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 GLIS2Q9BZE0 524 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 ZNF331Q9NQX6 463 aaPredicted RBP13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 FTSJ1Q9UET6 329 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 OR2M5A3KFT3 312 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 UPK1BO75841 260 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 EPOP01588 193 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 GABRR1P24046 479 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 GUK1Q16774 197 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 LACC1Q8IV20 430 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 PXYLP1Q8TE99 480 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 SLC45A3Q96JT2 553 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 ZNF382Q96SR6 550 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 PINK1Q9BXM7 581 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 SYNPO2LQ9H987 977 aa13.22□□□□□ -0.29
CCDC88A-201ENST00000263630 XKRY2A2RUG3 117 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 PLXDC1Q8IUK5 500 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 DTLQ9NZJ0 730 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 CHRNA9Q9UGM1 479 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 RNF11Q9Y3C5 154 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 RHBDD3Q9Y3P4 386 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 EVPLQ92817 2033 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 SCGB1C2P0DMR2 95 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 LYRM7Q5U5X0 104 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 ABHD17BQ5VST6 288 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 MAP1SQ66K74 1059 aaPredicted RBP13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 LCN10Q6JVE6 187 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 IL34Q6ZMJ4 242 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 MUS81Q96NY9 551 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 DCLRE1CQ96SD1 692 aaKnown RBP13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 ALG8Q9BVK2 526 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 KLF11O14901 512 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 SURF4O15260 269 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 MAKP20794 623 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 ECI1P42126 302 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 IRF4Q15306 451 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 DEFB115Q30KQ5 88 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 OR5D16Q8NGK9 328 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 ZNF251Q9BRH9 671 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 OR51B5Q9H339 312 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 SCPEP1Q9HB40 452 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 KIAA0355O15063 1070 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 SIX3O95343 332 aaPredicted RBP13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 ACPPP15309 386 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 GPR4P46093 362 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 GATSQ8NAP1 163 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 APH1AQ96BI3 265 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 GAR1Q9NY12 217 aaKnown RBP13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 TRIP11Q15643 1979 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 PPP1R2P9O14990 202 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 CYTIPO60759 359 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 SOX3P41225 446 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 ETV1P50549 477 aa13.21□□□□□ -0.29
CCDC88A-201ENST00000263630 TERTO14746 1132 aaKnown RBP13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 CD63P08962 238 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 HTR1EP28566 365 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 NANOGP8Q6NSW7 305 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 RAB7BQ96AH8 199 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 REEP6Q96HR9 211 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 KREMEN1Q96MU8 473 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 TRIB1Q96RU8 372 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 MKRN2Q9H000 416 aaKnown RBP13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 ENKD1Q9H0I2 346 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 NANOGQ9H9S0 305 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 FBRSL1Q9HCM7 1045 aaKnown RBP13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 SHROOM3Q8TF72 1996 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 NPIPA5A0A0B4J1W7 369 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 ADM5C9JUS6 153 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 BAXQ07812 192 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 ZNF266Q14584 549 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 AVPI1Q5T686 147 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 SLC35F2Q8IXU6 374 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 GIMAP1Q8WWP7 306 aa13.21□□□□□ -0.3
CCDC88A-201ENST00000263630 DIO2Q92813 273 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms