RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 ZNF417Q8TAU3 575 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 ADAMTS16Q8TE57 1224 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 BADQ92934 168 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 BPIFA2Q96DR5 249 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 MMP28Q9H239 520 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 DDX31Q9H8H2 851 aaKnown RBP10.13□□□□□ -0.79
CD44-201ENST00000263398 AK6Q9Y3D8 172 aaKnown RBP10.13□□□□□ -0.79
CD44-201ENST00000263398 IER3IP1Q9Y5U9 82 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 OR7A17O14581 309 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 ADAM12O43184 909 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 PRAF2O60831 178 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 CST5P28325 142 aaPredicted RBP10.13□□□□□ -0.79
CD44-201ENST00000263398 ADH6P28332 368 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 MRPS10P82664 201 aaKnown RBP10.13□□□□□ -0.79
CD44-201ENST00000263398 DEFB110Q30KQ9 67 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 ACSM3Q53FZ2 586 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 NHSL2Q5HYW2 709 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 FAM198BQ6UWH4 519 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 TRIM46Q7Z4K8 759 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 SLC35F2Q8IXU6 374 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 OR6C4Q8NGE1 309 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 SFXN5Q8TD22 340 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 CD300LFQ8TDQ1 290 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 SLC25A44Q96H78 314 aaPredicted RBP10.13□□□□□ -0.79
CD44-201ENST00000263398 C8orf33Q9H7E9 229 aaPredicted RBP10.13□□□□□ -0.79
CD44-201ENST00000263398 PCDH10Q9P2E7 1040 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 USP22Q9UPT9 525 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 A0A1B0GUL6 1792 aa10.13□□□□□ -0.79
CD44-201ENST00000263398 A0A1W2PQ09 198 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 HMX2A2RU54 273 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 PROS1P07225 676 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 NUDT7P0C024 238 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 ZNF888P0CJ79 500 aaPredicted RBP10.12□□□□□ -0.79
CD44-201ENST00000263398 DUSP3P51452 185 aaPredicted RBP10.12□□□□□ -0.79
CD44-201ENST00000263398 PRDX1Q06830 199 aaKnown RBP10.12□□□□□ -0.79
CD44-201ENST00000263398 DSC1Q08554 894 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 L3MBTL4Q8NA19 623 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 OR13F1Q8NGS4 319 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 BORCS8Q96FH0 119 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 OR52D1Q9H346 318 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 SLA2Q9H6Q3 261 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 FANCFQ9NPI8 374 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 ACTR10Q9NZ32 417 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 GMPR2Q9P2T1 348 aaKnown RBP10.12□□□□□ -0.79
CD44-201ENST00000263398 NUBP2Q9Y5Y2 271 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 PIAS3Q9Y6X2 628 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 A0A0G2JMP0 313 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 C17orf113A0A1B0GUU1 675 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 MEIOCA2RUB1 952 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 VSTM5A8MXK1 200 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 MAN2B1O00754 1011 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 CTDSP2O14595 271 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 SC5DO75845 299 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 IL33O95760 270 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 SYPP08247 313 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 ZNF16P17020 682 aaPredicted RBP10.12□□□□□ -0.79
CD44-201ENST00000263398 SYPL1Q16563 259 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 SBSNQ6UWP8 590 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 GSG1LQ6UXU4 331 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 TMEM151BQ8IW70 566 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 PELI3Q8N2H9 469 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 RNF175Q8N4F7 328 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 DNAJC22Q8N4W6 341 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 OR4M2Q8NGB6 313 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 OR52E1Q8NGJ3 308 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 TMEM163Q8TC26 289 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 UBTD2Q8WUN7 234 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 NECTIN4Q96NY8 510 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 TREX2Q9BQ50 279 aaPredicted RBP10.12□□□□□ -0.79
CD44-201ENST00000263398 NAA11Q9BSU3 229 aaPredicted RBP10.12□□□□□ -0.79
CD44-201ENST00000263398 LDAHQ9H6V9 325 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 BABAM2Q9NXR7 383 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 USP36Q9P275 1121 aaKnown RBP10.12□□□□□ -0.79
CD44-201ENST00000263398 ERVK-19Q9WJR5 959 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 HS3ST2Q9Y278 367 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 RP1L1Q8IWN7 2480 aaPredicted RBP10.12□□□□□ -0.79
CD44-201ENST00000263398 ACOT7O00154 380 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 SLC33A1O00400 549 aaPredicted RBP10.12□□□□□ -0.79
CD44-201ENST00000263398 OR2T1O43869 369 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 CHMP24386 653 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 LRRC56Q8IYG6 542 aaPredicted RBP10.12□□□□□ -0.79
CD44-201ENST00000263398 OR2T11Q8NH01 316 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 NINJ1Q92982 152 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 THAP7Q9BT49 309 aaPredicted RBP10.12□□□□□ -0.79
CD44-201ENST00000263398 NT5DC2Q9H857 520 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 TEX10Q9NXF1 929 aaPredicted RBP10.12□□□□□ -0.79
CD44-201ENST00000263398 GDE1Q9NZC3 331 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 CACNG2Q9Y698 323 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 LRP5O75197 1615 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 UBFD1O14562 309 aaKnown RBP10.12□□□□□ -0.79
CD44-201ENST00000263398 DNAJB6O75190 326 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 SYNGR4O95473 234 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 SLC6A8P48029 635 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 HNRNPFP52597 415 aaKnown RBP10.12□□□□□ -0.79
CD44-201ENST00000263398 PGGHGQ32M88 737 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 CARD17Q5XLA6 110 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 RPL3LQ92901 407 aaKnown RBP10.12□□□□□ -0.79
CD44-201ENST00000263398 LMF1Q96S06 567 aa10.12□□□□□ -0.79
CD44-201ENST00000263398 C7orf50Q9BRJ6 194 aaKnown RBP10.12□□□□□ -0.79
CD44-201ENST00000263398 CWH43Q9H720 699 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms