RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 BORCS7Q96B45 105 aa18.05■□□□□ 0.48
UPF1-201ENST00000262803 OR4K3Q96R72 315 aa18.05■□□□□ 0.48
UPF1-201ENST00000262803 CHRDQ9H2X0 955 aa18.05■□□□□ 0.48
UPF1-201ENST00000262803 C2orf72A6NCS6 295 aa18.05■□□□□ 0.48
UPF1-201ENST00000262803 BCL2A1Q16548 175 aa18.05■□□□□ 0.48
UPF1-201ENST00000262803 MISPQ8IVT2 679 aa18.05■□□□□ 0.48
UPF1-201ENST00000262803 TMEM174Q8WUU8 243 aa18.05■□□□□ 0.48
UPF1-201ENST00000262803 H3BMQ9 156 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 SRPX2O60687 465 aaPredicted RBP18.04■□□□□ 0.48
UPF1-201ENST00000262803 TMEM225BP0DP42 221 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 AKR1C2P52895 323 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 MICAQ29983 383 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 GPR139Q6DWJ6 353 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 ZNF597Q96LX8 424 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 C3orf30Q96M34 536 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 COG8Q96MW5 612 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 AGPAT4Q9NRZ5 378 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 IL37Q9NZH6 218 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 C5AR2Q9P296 337 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 SLC22A7Q9Y694 548 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 CITO14578 2027 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 ZFAND5O76080 213 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 SDC1P18827 310 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 AHRP35869 848 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 COL28A1Q2UY09 1125 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 PHC2Q8IXK0 858 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 OR9Q2Q8NGE9 314 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 TMEM246Q9BRR3 403 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 F5H0A9 414 aaPredicted RBP18.04■□□□□ 0.48
UPF1-201ENST00000262803 CD46P15529 392 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 NR0B1P51843 470 aaKnown RBP18.04■□□□□ 0.48
UPF1-201ENST00000262803 SELENOWP63302 87 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 SNTB2Q13425 540 aaKnown RBP18.04■□□□□ 0.48
UPF1-201ENST00000262803 NFATC4Q14934 902 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 TMEM244Q5VVB8 128 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 GALNT11Q8NCW6 608 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 TFAP2CQ92754 450 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 UCN3Q969E3 161 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 SLC25A44Q96H78 314 aaPredicted RBP18.04■□□□□ 0.48
UPF1-201ENST00000262803 FAM46AQ96IP4 442 aaKnown RBP18.04■□□□□ 0.48
UPF1-201ENST00000262803 PLEKHA3Q9HB20 300 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 ARNT2Q9HBZ2 717 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 FBXL3Q9UKT7 428 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 CPNE6O95741 557 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 IDUAP35475 653 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 CDKN2CP42773 168 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 CNTN4Q8IWV2 1026 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 GALNT6Q8NCL4 622 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 WDR20Q8TBZ3 569 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 RNF128Q8TEB7 428 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 SNAPC3Q92966 411 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 DCAF13Q9NV06 445 aaKnown RBP18.04■□□□□ 0.48
UPF1-201ENST00000262803 GPR45Q9Y5Y3 372 aa18.04■□□□□ 0.48
UPF1-201ENST00000262803 MPPED1O15442 326 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 SMAD6O43541 496 aaKnown RBP18.03■□□□□ 0.48
UPF1-201ENST00000262803 GALR3O60755 368 aaPredicted RBP18.03■□□□□ 0.48
UPF1-201ENST00000262803 BCAS1O75363 584 aaPredicted RBP18.03■□□□□ 0.48
UPF1-201ENST00000262803 CDK3Q00526 305 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 PNCKQ6P2M8 343 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 NRMQ8IXM6 262 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 GPR26Q8NDV2 337 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 USB1Q9BQ65 265 aaKnown RBP18.03■□□□□ 0.48
UPF1-201ENST00000262803 NMNAT1Q9HAN9 279 aaPredicted RBP18.03■□□□□ 0.48
UPF1-201ENST00000262803 ZNF160Q9HCG1 818 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 RGPD1P0DJD0 1748 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 RAB3AP20336 220 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 ZNF140P52738 457 aaPredicted RBP18.03■□□□□ 0.48
UPF1-201ENST00000262803 KEAP1Q14145 624 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 TRNP1Q6NT89 227 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 ELMOD2Q8IZ81 293 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 ANKK1Q8NFD2 765 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 OR14A16Q8NHC5 309 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 NTMT1Q9BV86 223 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 GPR52Q9Y2T5 361 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 POU3F2P20265 443 aaPredicted RBP18.03■□□□□ 0.48
UPF1-201ENST00000262803 CSNK1A1P48729 337 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 HACD4Q5VWC8 232 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 SERPINA11Q86U17 422 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 MCATQ8IVS2 390 aaKnown RBP18.03■□□□□ 0.48
UPF1-201ENST00000262803 BEST3Q8N1M1 668 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 POC1BQ8TC44 478 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 GPN2Q9H9Y4 310 aaPredicted RBP18.03■□□□□ 0.48
UPF1-201ENST00000262803 C5P01031 1676 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 FAM217AQ8IXS0 508 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 IQCF1Q8N6M8 205 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 TRMT10AQ8TBZ6 339 aaKnown RBP18.03■□□□□ 0.48
UPF1-201ENST00000262803 SLC2A12Q8TD20 617 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 GPR148Q8TDV2 347 aa18.03■□□□□ 0.48
UPF1-201ENST00000262803 PTRH2Q9Y3E5 179 aaKnown RBP18.03■□□□□ 0.48
UPF1-201ENST00000262803 IL7P13232 177 aa18.02■□□□□ 0.48
UPF1-201ENST00000262803 EIF2B1Q14232 305 aaKnown RBP18.02■□□□□ 0.48
UPF1-201ENST00000262803 DNAJA3Q96EY1 480 aa18.02■□□□□ 0.48
UPF1-201ENST00000262803 MSLNLQ96KJ4 702 aa18.02■□□□□ 0.48
UPF1-201ENST00000262803 AP1S3Q96PC3 154 aa18.02■□□□□ 0.48
UPF1-201ENST00000262803 PAQR5Q9NXK6 330 aaPredicted RBP18.02■□□□□ 0.48
UPF1-201ENST00000262803 TCRBV3S1A0A5B6 114 aa18.02■□□□□ 0.48
UPF1-201ENST00000262803 SULT2B1O00204 365 aa18.02■□□□□ 0.48
UPF1-201ENST00000262803 ARNTLO00327 626 aa18.02■□□□□ 0.48
UPF1-201ENST00000262803 ZNF888P0CJ79 500 aaPredicted RBP18.02■□□□□ 0.48
UPF1-201ENST00000262803 CEBPBP17676 345 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms