RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 KLHL12Q53G59 568 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 ENTPD8Q5MY95 495 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 CCNJQ5T5M9 372 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 DEDD2Q8WXF8 326 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 OR8D1Q8WZ84 308 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 AP3S1Q92572 193 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 OR7D2Q96RA2 312 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 INSM2Q96T92 566 aaPredicted RBP9.39□□□□□ -0.91
LIG3-201ENST00000262327 TMEM245Q9H330 911 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 SLC27A6Q9Y2P4 619 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 C2orf16Q68DN1 1984 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 COL4A3Q01955 1670 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 TRAV6A0A075B6T7 132 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 A0A0A6YYD5 115 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 TMEM129A0AVI4 362 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 MAN2B1O00754 1011 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 AIFM1O95831 613 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 PAK4O96013 591 aaPredicted RBP9.39□□□□□ -0.91
LIG3-201ENST00000262327 THY1P04216 161 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 SYPP08247 313 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 FRKP42685 505 aaPredicted RBP9.39□□□□□ -0.91
LIG3-201ENST00000262327 CBX5P45973 191 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 SRP9P49458 86 aaKnown RBP9.39□□□□□ -0.91
LIG3-201ENST00000262327 PDX1P52945 283 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 AP2S1P53680 142 aaPredicted RBP9.39□□□□□ -0.91
LIG3-201ENST00000262327 RGS8P57771 180 aaPredicted RBP9.39□□□□□ -0.91
LIG3-201ENST00000262327 OR10A3P58181 314 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 ID2Q02363 134 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 MLF2Q15773 248 aaPredicted RBP9.39□□□□□ -0.91
LIG3-201ENST00000262327 PLBD1Q6P4A8 553 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 PLEKHM3Q6ZWE6 761 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 ACOT4Q8N9L9 421 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 PCNPQ8WW12 178 aaKnown RBP9.39□□□□□ -0.91
LIG3-201ENST00000262327 QRFPRQ96P65 431 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 MENTQ9BUN1 341 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 SLC38A1Q9H2H9 487 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 SLA2Q9H6Q3 261 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 HINT3Q9NQE9 182 aaKnown RBP9.39□□□□□ -0.91
LIG3-201ENST00000262327 RBFOX1Q9NWB1 397 aaKnown RBP9.39□□□□□ -0.91
LIG3-201ENST00000262327 EXTL2Q9UBQ6 330 aa9.39□□□□□ -0.91
LIG3-201ENST00000262327 MYO9BQ13459 2157 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 TRBV23OR9-2A0A075B6M9 112 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 NPIPA5A0A0B4J1W7 369 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 C17orf113A0A1B0GUU1 675 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 NPIPA7E9PJI5 369 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 STK25O00506 426 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 ZNF254O75437 659 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 GKN3PP0CG01 181 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 NPIPA8P0DM63 369 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 ATXN8OSP0DMR3 200 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 PRKAR1AP10644 381 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 SHC1P29353 583 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 P2RY2P41231 377 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 EVX1P49640 407 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 PPP3R1P63098 170 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 TGM3Q08188 693 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 ZNF234Q14588 700 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 SLC9A5Q14940 896 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 AGERQ15109 404 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 CLVS2Q5SYC1 327 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 SHEQ5VZ18 495 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 VASNQ6EMK4 673 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 TMEM91Q6ZNR0 172 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 KRT74Q7RTS7 529 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 C16orf62Q7Z3J2 963 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 SYT9Q86SS6 491 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 BMPERQ8N8U9 685 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 SLC16A11Q8NCK7 471 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 NUP43Q8NFH3 380 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 PHF21AQ96BD5 680 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 HCAR1Q9BXC0 346 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 FGF20Q9NP95 211 aaPredicted RBP9.38□□□□□ -0.91
LIG3-201ENST00000262327 ACSS1Q9NUB1 689 aaPredicted RBP9.38□□□□□ -0.91
LIG3-201ENST00000262327 ACOXLQ9NUZ1 547 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 GPR34Q9UPC5 381 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 OR5K3A6NET4 321 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 MAGEB4O15481 346 aaPredicted RBP9.38□□□□□ -0.91
LIG3-201ENST00000262327 OMPP47874 163 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 CDK3Q00526 305 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 ARL9Q6T311 187 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 RPTNQ6XPR3 784 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 TMEM99Q8N816 258 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 SLC37A3Q8NCC5 494 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 GNPDA2Q8TDQ7 276 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 ELSPBP1Q96BH3 223 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 TOE1Q96GM8 510 aaKnown RBP9.38□□□□□ -0.91
LIG3-201ENST00000262327 LRIG1Q96JA1 1093 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 ZNF514Q96K75 400 aaPredicted RBP9.38□□□□□ -0.91
LIG3-201ENST00000262327 LINC00615Q96LM1 132 aaPredicted RBP9.38□□□□□ -0.91
LIG3-201ENST00000262327 MCHR1Q99705 422 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 DPH1Q9BZG8 443 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 BEX1Q9HBH7 125 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 CAPN10Q9HC96 672 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 SPHK1Q9NYA1 384 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 H2AFY2Q9P0M6 372 aaPredicted RBP9.38□□□□□ -0.91
LIG3-201ENST00000262327 LIPT1Q9Y234 373 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 MTCH2Q9Y6C9 303 aa9.38□□□□□ -0.91
LIG3-201ENST00000262327 A0A0B4J203 849 aa9.37□□□□□ -0.91
LIG3-201ENST00000262327 E9PI62 339 aa9.37□□□□□ -0.91
LIG3-201ENST00000262327 ZNF780AO75290 641 aaPredicted RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms