RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 CBFA2T3O75081 653 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 TSPAN12O95859 305 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 MT-ND2P03891 347 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 H2BFMP0C1H6 154 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 ADORA3P0DMS8 318 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 FZD2Q14332 565 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 ERI1Q8IV48 349 aaKnown RBP12.77□□□□□ -0.37
LDLR-201ENST00000252444 CA13Q8N1Q1 262 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 NETO1Q8TDF5 533 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 TTC9Q92623 222 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 SPTSSAQ969W0 71 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 SLC19A3Q9BZV2 496 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 FAM118AQ9NWS6 357 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 TEX13CA0A0J9YWL9 993 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 MAOBP27338 520 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 EEF1A1P68104 462 aaKnown RBP12.77□□□□□ -0.37
LDLR-201ENST00000252444 EEF1A2Q05639 463 aaKnown RBP12.77□□□□□ -0.37
LDLR-201ENST00000252444 EEF1A1P5Q5VTE0 462 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 XKR5Q6UX68 686 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 ASB18Q6ZVZ8 466 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 ADGRG5Q8IZF4 528 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 ZADH2Q8N4Q0 377 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 SH3YL1Q96HL8 342 aaPredicted RBP12.77□□□□□ -0.37
LDLR-201ENST00000252444 KLHL15Q96M94 604 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 INIPQ9NRY2 104 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 MYO16Q9Y6X6 1858 aa12.77□□□□□ -0.37
LDLR-201ENST00000252444 PLPP1O14494 284 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 TNFSF14O43557 240 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 MT-ND1P03886 318 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 ITGB2P05107 769 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 PVRP15151 417 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 PPICP45877 212 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 ELP4Q96EB1 424 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 ANKRD60Q9BZ19 345 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 GPR160Q9UJ42 338 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 GPR171O14626 319 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 PRKCAP17252 672 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 DRD3P35462 400 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 MPLP40238 635 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 RAB14P61106 215 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 HYAL2Q12891 473 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 KCNAB2Q13303 367 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 HLA-BQ31612 363 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 C6orf141Q5SZD1 244 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 PAPD4Q6PIY7 484 aaKnown RBP12.76□□□□□ -0.37
LDLR-201ENST00000252444 ZNF704Q6ZNC4 412 aaPredicted RBP12.76□□□□□ -0.37
LDLR-201ENST00000252444 PRSS48Q7RTY5 328 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 OR4N5Q8IXE1 308 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 IZUMO1Q8IYV9 350 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 DCUN1D5Q9BTE7 237 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 TWSG1Q9GZX9 223 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 ZBTB20Q9HC78 741 aaPredicted RBP12.76□□□□□ -0.37
LDLR-201ENST00000252444 NGBQ9NPG2 151 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 MEPEQ9NQ76 525 aaPredicted RBP12.76□□□□□ -0.37
LDLR-201ENST00000252444 FBXL3Q9UKT7 428 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 SLC7A11Q9UPY5 501 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 KLF13Q9Y2Y9 288 aaPredicted RBP12.76□□□□□ -0.37
LDLR-201ENST00000252444 POU3F2P20265 443 aaPredicted RBP12.76□□□□□ -0.37
LDLR-201ENST00000252444 TSPAN31Q12999 210 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 SLC14A1Q13336 389 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 FGFBP1Q14512 234 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 ALG10Q5BKT4 473 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 ZNF454Q8N9F8 522 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 CCDC54Q8NEL0 328 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 CLEC1BQ9P126 229 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 LOXL2Q9Y4K0 774 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 N6AMT1Q9Y5N5 214 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 TRAV36DV7A0A075B6V5 113 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 CCRL2O00421 344 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 LRRTM2O43300 516 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 APOBEC1P41238 236 aaKnown RBP12.76□□□□□ -0.37
LDLR-201ENST00000252444 HBA1P69905 142 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 RAB40BQ12829 278 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 TMEM201Q5SNT2 666 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 ZSCAN4Q8NAM6 433 aaPredicted RBP12.76□□□□□ -0.37
LDLR-201ENST00000252444 KCNE4Q8WWG9 221 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 ACOT13Q9NPJ3 140 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 ACSL6Q9UKU0 697 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 MKLN1Q9UL63 735 aa12.76□□□□□ -0.37
LDLR-201ENST00000252444 MNX1P50219 401 aaPredicted RBP12.75□□□□□ -0.37
LDLR-201ENST00000252444 TMEM215Q68D42 235 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 HMBOX1Q6NT76 420 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 FAM131AQ6UXB0 335 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 PIWIL3Q7Z3Z3 882 aaKnown RBP12.75□□□□□ -0.37
LDLR-201ENST00000252444 UBE2J2Q8N2K1 259 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 ACBD7Q8N6N7 88 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 OR1J2Q8NGS2 313 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 OR2T11Q8NH01 316 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 C2orf42Q9NWW7 574 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 ZNF701M0R085 212 aaPredicted RBP12.75□□□□□ -0.37
LDLR-201ENST00000252444 HNRNPCP07910 306 aaKnown RBP eCLIP12.75□□□□□ -0.371e-7■■■□□ 17.1
LDLR-201ENST00000252444 CHRNB1P11230 501 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 EIF2S3P41091 472 aaKnown RBP12.75□□□□□ -0.37
LDLR-201ENST00000252444 TLE3Q04726 772 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 CLEC12AQ5QGZ9 265 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 TCEANCQ8N8B7 351 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 OR1J4Q8NGS1 313 aa12.75□□□□□ -0.37
LDLR-201ENST00000252444 RNASE11Q8TAA1 199 aaKnown RBP12.75□□□□□ -0.37
LDLR-201ENST00000252444 SNIP1Q8TAD8 396 aaKnown RBP12.75□□□□□ -0.37
LDLR-201ENST00000252444 CHCHD6Q9BRQ6 235 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 659.1 ms