RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 SEC13P55735 322 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 OR12D2P58182 307 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 C1DQ13901 141 aaKnown RBP9.96□□□□□ -0.82
USP28-201ENST00000003302 ELOAQ14241 798 aaKnown RBP9.96□□□□□ -0.82
USP28-201ENST00000003302 KLHL12Q53G59 568 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 XKRXQ6PP77 449 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 RFPL4BQ6ZWI9 263 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 OR4N4Q8N0Y3 316 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 OR6C4Q8NGE1 309 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 RBCK1Q9BYM8 510 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 SLC22A4Q9H015 551 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 OR51V1Q9H2C8 321 aa9.96□□□□□ -0.82
USP28-201ENST00000003302 HRKO00198 91 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 LYRM1O43325 122 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 MPZL2O60487 215 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 ALPPP05187 535 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 PVRP15151 417 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 CTNNB1P35222 781 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 MAP2K3P46734 347 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 GCGRP47871 477 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 CCR6P51684 374 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 ST8SIA6P61647 398 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 BTN3A2P78410 334 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 SLC3A1Q07837 685 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 FAPQ12884 760 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 ELAVL3Q14576 367 aaKnown RBP9.95□□□□□ -0.82
USP28-201ENST00000003302 BTBD16Q32M84 506 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 DEFB134Q4QY38 66 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 RD3Q7Z3Z2 195 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 OR11H7Q8NGC8 314 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 OR13C2Q8NGS9 318 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 MAGEB10Q96LZ2 347 aaPredicted RBP9.95□□□□□ -0.82
USP28-201ENST00000003302 CAMK1GQ96NX5 476 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 QRFPRQ96P65 431 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 EPHX3Q9H6B9 360 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 HSPB11Q9Y547 144 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 DSPP15924 2871 aaKnown RBP9.95□□□□□ -0.82
USP28-201ENST00000003302 CTSVO60911 334 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 NR2F6P10588 404 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 ARSBP15848 533 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 FAAP20Q6NZ36 180 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 ARL9Q6T311 187 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 GPR135Q8IZ08 494 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 OR5J2Q8NH18 312 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 ENKURQ8TC29 256 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 ZPLD1Q8TCW7 415 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 KCNJ15Q99712 375 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 IRF2BPLQ9H1B7 796 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 UBQLN3Q9H347 655 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 SLCO1C1Q9NYB5 712 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 DPP7Q9UHL4 492 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 NOTOA8MTQ0 251 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 CLTBP09497 229 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 F3P13726 295 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 CPMP14384 443 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 SSTR2P30874 369 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 GABRA5P31644 462 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 FAM53BQ14153 422 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 GPR176Q14439 515 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 EXOSC7Q15024 291 aaKnown RBP9.95□□□□□ -0.82
USP28-201ENST00000003302 FCN2Q15485 313 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 C3orf38Q5JPI3 329 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 CEP78Q5JTW2 689 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 OR4N2Q8NGD1 307 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 ZNF524Q96C55 264 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 FGF22Q9HCT0 170 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 MEPEQ9NQ76 525 aaPredicted RBP9.95□□□□□ -0.82
USP28-201ENST00000003302 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.95□□□□□ -0.82
USP28-201ENST00000003302 C17orf113A0A1B0GUU1 675 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 KDM4EB2RXH2 506 aaPredicted RBP9.95□□□□□ -0.82
USP28-201ENST00000003302 SLC31A1O15431 190 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 SEC14L5O43304 696 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 ZNF780AO75290 641 aaPredicted RBP9.95□□□□□ -0.82
USP28-201ENST00000003302 CT62P0C5K7 136 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 CPN2P22792 545 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 S100A1P23297 94 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 RPS15P62841 145 aaKnown RBP9.95□□□□□ -0.82
USP28-201ENST00000003302 DPTQ07507 201 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 NNATQ16517 81 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 TANGO2Q6ICL3 276 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 ZNF322Q6U7Q0 402 aaPredicted RBP9.95□□□□□ -0.82
USP28-201ENST00000003302 ZNF620Q6ZNG0 422 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 TEX47Q8TBZ9 253 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 THAP4Q8WY91 577 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 POP5Q969H6 163 aaKnown RBP9.95□□□□□ -0.82
USP28-201ENST00000003302 PTCHD1Q96NR3 888 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 MCHR1Q99705 422 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 UCKL1Q9NWZ5 548 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 MARK1Q9P0L2 795 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 EXTL2Q9UBQ6 330 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 TBC1D29Q9UFV1 150 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 RASD1Q9Y272 281 aa9.95□□□□□ -0.82
USP28-201ENST00000003302 A0A0A6YYJ9 748 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 QSOX1O00391 747 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 KLF4O43474 513 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 WISP1O95388 367 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 ASGR2P07307 311 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 SLC35G4P0C7Q5 338 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 MINDY4Q4G0A6 757 aa9.94□□□□□ -0.82
USP28-201ENST00000003302 NRSN1Q8IZ57 195 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms