RNA–Protein interactions for RNA: ENST00000639856.1

TRIM3-215, Transcript of tripartite motif containing 3, humanhuman

TSL 5 BASIC

Gene TRIM3, Length 2,137 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-215ENST00000639856 RAB3GAP1Q15042 981 aa18.4■□□□□ 0.54
TRIM3-215ENST00000639856 KLHDC4Q8TBB5 520 aa18.4■□□□□ 0.54
TRIM3-215ENST00000639856 USP21Q9UK80 565 aa18.4■□□□□ 0.54
TRIM3-215ENST00000639856 ZBTB1Q9Y2K1 713 aa18.4■□□□□ 0.54
TRIM3-215ENST00000639856 KCNQ2O43526 872 aa18.39■□□□□ 0.53
TRIM3-215ENST00000639856 ARXQ96QS3 562 aa18.39■□□□□ 0.53
TRIM3-215ENST00000639856 FOXD4L1Q9NU39 408 aa18.39■□□□□ 0.53
TRIM3-215ENST00000639856 CWC25Q9NXE8 425 aaPredicted RBP18.39■□□□□ 0.53
TRIM3-215ENST00000639856 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.39■□□□□ 0.53
TRIM3-215ENST00000639856 DDX11L8A8MPP1 907 aa18.38■□□□□ 0.53
TRIM3-215ENST00000639856 ST18O60284 1047 aa18.38■□□□□ 0.53
TRIM3-215ENST00000639856 TNPO1Q92973 898 aaKnown RBP18.38■□□□□ 0.53
TRIM3-215ENST00000639856 SIL1Q9H173 461 aa18.38■□□□□ 0.53
TRIM3-215ENST00000639856 H7C1W4 665 aa18.38■□□□□ 0.53
TRIM3-215ENST00000639856 KIF6Q6ZMV9 814 aa18.37■□□□□ 0.53
TRIM3-215ENST00000639856 PI4K2BQ8TCG2 481 aa18.37■□□□□ 0.53
TRIM3-215ENST00000639856 COL15A1P39059 1388 aa18.37■□□□□ 0.53
TRIM3-215ENST00000639856 RABL6Q3YEC7 729 aaPredicted RBP18.37■□□□□ 0.53
TRIM3-215ENST00000639856 CCDC191Q8NCU4 936 aa18.36■□□□□ 0.53
TRIM3-215ENST00000639856 GBP4Q96PP9 640 aa18.36■□□□□ 0.53
TRIM3-215ENST00000639856 ISCA1Q9BUE6 129 aa18.36■□□□□ 0.53
TRIM3-215ENST00000639856 SASH1O94885 1247 aa18.35■□□□□ 0.53
TRIM3-215ENST00000639856 RFX5P48382 616 aaPredicted RBP18.35■□□□□ 0.53
TRIM3-215ENST00000639856 TCIRG1Q13488 830 aa18.35■□□□□ 0.53
TRIM3-215ENST00000639856 HLFQ16534 295 aa18.35■□□□□ 0.53
TRIM3-215ENST00000639856 PALLDQ8WX93 1383 aa18.35■□□□□ 0.53
TRIM3-215ENST00000639856 MAP3K15Q6ZN16 1313 aa18.35■□□□□ 0.53
TRIM3-215ENST00000639856 USP42Q9H9J4 1324 aaKnown RBP18.35■□□□□ 0.53
TRIM3-215ENST00000639856 LOC102724428A0A0B4J2F2 783 aa18.35■□□□□ 0.53
TRIM3-215ENST00000639856 TRAK2O60296 914 aa18.35■□□□□ 0.53
TRIM3-215ENST00000639856 ATP6V1AP38606 617 aa18.35■□□□□ 0.53
TRIM3-215ENST00000639856 SIK1P57059 783 aa18.35■□□□□ 0.53
TRIM3-215ENST00000639856 FOXO4P98177 505 aa18.35■□□□□ 0.53
TRIM3-215ENST00000639856 MEX3CQ5U5Q3 659 aaKnown RBP18.35■□□□□ 0.53
TRIM3-215ENST00000639856 ERC1Q8IUD2 1116 aa18.35■□□□□ 0.53
TRIM3-215ENST00000639856 MCCP23508 829 aa18.34■□□□□ 0.53
TRIM3-215ENST00000639856 G3BP1Q13283 466 aaKnown RBP eCLIP18.34■□□□□ 0.53
TRIM3-215ENST00000639856 LMBR1LQ6UX01 489 aa18.34■□□□□ 0.53
TRIM3-215ENST00000639856 ANO2Q9NQ90 1003 aa18.34■□□□□ 0.53
TRIM3-215ENST00000639856 THSD7AQ9UPZ6 1657 aa18.34■□□□□ 0.53
TRIM3-215ENST00000639856 EPB41L2O43491 1005 aaKnown RBP18.34■□□□□ 0.53
TRIM3-215ENST00000639856 ITPK1Q13572 414 aa18.34■□□□□ 0.53
TRIM3-215ENST00000639856 CLASRPQ8N2M8 674 aaKnown RBP18.34■□□□□ 0.53
TRIM3-215ENST00000639856 TTC41PQ6P2S7 1318 aa18.33■□□□□ 0.53
TRIM3-215ENST00000639856 MAP4K4O95819 1239 aaPredicted RBP18.33■□□□□ 0.52
TRIM3-215ENST00000639856 ANAPC15P60006 121 aa18.33■□□□□ 0.52
TRIM3-215ENST00000639856 PTPN12Q05209 780 aaKnown RBP18.33■□□□□ 0.52
TRIM3-215ENST00000639856 PTF1AQ7RTS3 328 aa18.33■□□□□ 0.52
TRIM3-215ENST00000639856 MYH14Q7Z406 1995 aaKnown RBP18.33■□□□□ 0.52
TRIM3-215ENST00000639856 GIGYF2Q6Y7W6 1299 aaKnown RBP18.32■□□□□ 0.52
TRIM3-215ENST00000639856 AACSQ86V21 672 aa18.32■□□□□ 0.52
TRIM3-215ENST00000639856 NUP98P52948 1817 aa18.32■□□□□ 0.52
TRIM3-215ENST00000639856 GPTP24298 496 aa18.32■□□□□ 0.52
TRIM3-215ENST00000639856 FAM182BQ5T319 152 aa18.32■□□□□ 0.52
TRIM3-215ENST00000639856 INTS5Q6P9B9 1019 aaKnown RBP18.32■□□□□ 0.52
TRIM3-215ENST00000639856 CNTROBQ8N137 903 aa18.32■□□□□ 0.52
TRIM3-215ENST00000639856 COPRSQ9NQ92 184 aa18.32■□□□□ 0.52
TRIM3-215ENST00000639856 TBC1D2BQ9UPU7 963 aa18.32■□□□□ 0.52
TRIM3-215ENST00000639856 CHMP3Q9Y3E7 222 aa18.32■□□□□ 0.52
TRIM3-215ENST00000639856 ANKRD36CQ5JPF3 1778 aa18.32■□□□□ 0.52
TRIM3-215ENST00000639856 AFF2P51816 1311 aa18.31■□□□□ 0.52
TRIM3-215ENST00000639856 CRKLP46109 303 aaKnown RBP18.31■□□□□ 0.52
TRIM3-215ENST00000639856 EAF2Q96CJ1 260 aaPredicted RBP18.31■□□□□ 0.52
TRIM3-215ENST00000639856 IL17RAQ96F46 866 aa18.31■□□□□ 0.52
TRIM3-215ENST00000639856 GLRX3O76003 335 aaKnown RBP18.31■□□□□ 0.52
TRIM3-215ENST00000639856 IL6STP40189 918 aaPredicted RBP18.31■□□□□ 0.52
TRIM3-215ENST00000639856 CLEC17AQ6ZS10 378 aa18.31■□□□□ 0.52
TRIM3-215ENST00000639856 CWC22Q9HCG8 908 aaKnown RBP18.31■□□□□ 0.52
TRIM3-215ENST00000639856 CCDC87Q9NVE4 849 aa18.31■□□□□ 0.52
TRIM3-215ENST00000639856 CICQ96RK0 1608 aaPredicted RBP18.3■□□□□ 0.52
TRIM3-215ENST00000639856 IFIT2P09913 472 aaKnown RBP18.3■□□□□ 0.52
TRIM3-215ENST00000639856 NEK4P51957 841 aa18.3■□□□□ 0.52
TRIM3-215ENST00000639856 TRIM28Q13263 835 aaKnown RBP18.3■□□□□ 0.52
TRIM3-215ENST00000639856 DZIP3Q86Y13 1208 aaKnown RBP18.3■□□□□ 0.52
TRIM3-215ENST00000639856 TLR7Q9NYK1 1049 aaKnown RBP18.3■□□□□ 0.52
TRIM3-215ENST00000639856 RREB1Q92766 1687 aa18.3■□□□□ 0.52
TRIM3-215ENST00000639856 SSFA2P28290 1259 aa18.29■□□□□ 0.52
TRIM3-215ENST00000639856 FAM89AQ96GI7 184 aa18.29■□□□□ 0.52
TRIM3-215ENST00000639856 IL25Q9H293 177 aa18.29■□□□□ 0.52
TRIM3-215ENST00000639856 PALD1Q9ULE6 856 aa18.29■□□□□ 0.52
TRIM3-215ENST00000639856 PTMSP20962 102 aa18.29■□□□□ 0.52
TRIM3-215ENST00000639856 MCM2P49736 904 aa18.29■□□□□ 0.52
TRIM3-215ENST00000639856 EIF5P55010 431 aaKnown RBP18.29■□□□□ 0.52
TRIM3-215ENST00000639856 NUCB2P80303 420 aa18.29■□□□□ 0.52
TRIM3-215ENST00000639856 SYNE4Q8N205 404 aa18.29■□□□□ 0.52
TRIM3-215ENST00000639856 CCDC8Q9H0W5 538 aaPredicted RBP18.29■□□□□ 0.52
TRIM3-215ENST00000639856 COL5A3P25940 1745 aaPredicted RBP18.28■□□□□ 0.52
TRIM3-215ENST00000639856 KCNQ4P56696 695 aa18.28■□□□□ 0.52
TRIM3-215ENST00000639856 GJD4Q96KN9 370 aaPredicted RBP18.28■□□□□ 0.52
TRIM3-215ENST00000639856 SGSM2O43147 1006 aa18.28■□□□□ 0.52
TRIM3-215ENST00000639856 NLRP10Q86W26 655 aa18.28■□□□□ 0.52
TRIM3-215ENST00000639856 SMARCC1Q92922 1105 aaPredicted RBP18.28■□□□□ 0.52
TRIM3-215ENST00000639856 GPATCH3Q96I76 525 aa18.28■□□□□ 0.52
TRIM3-215ENST00000639856 ECHDC1Q9NTX5 307 aa18.28■□□□□ 0.52
TRIM3-215ENST00000639856 PCCAP05165 728 aaPredicted RBP18.27■□□□□ 0.52
TRIM3-215ENST00000639856 TFCP2Q12800 502 aa18.27■□□□□ 0.52
TRIM3-215ENST00000639856 CYP2E1P05181 493 aaPredicted RBP18.26■□□□□ 0.51
TRIM3-215ENST00000639856 HSPA4P34932 840 aa18.26■□□□□ 0.51
TRIM3-215ENST00000639856 L1TD1Q5T7N2 865 aaKnown RBP18.26■□□□□ 0.51
TRIM3-215ENST00000639856 ZBTB38Q8NAP3 1195 aaPredicted RBP18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms