RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 FOXO4P98177 505 aa20.83■□□□□ 0.92
CLN3-252ENST00000636907 OS9Q13438 667 aaPredicted RBP20.83■□□□□ 0.92
CLN3-252ENST00000636907 LY75O60449 1722 aa20.82■□□□□ 0.92
CLN3-252ENST00000636907 GPTP24298 496 aa20.82■□□□□ 0.92
CLN3-252ENST00000636907 NLRP10Q86W26 655 aa20.82■□□□□ 0.92
CLN3-252ENST00000636907 RFX5P48382 616 aaPredicted RBP20.81■□□□□ 0.92
CLN3-252ENST00000636907 PDE1AP54750 535 aa20.81■□□□□ 0.92
CLN3-252ENST00000636907 RBM6P78332 1123 aaKnown RBP20.81■□□□□ 0.92
CLN3-252ENST00000636907 KRT27Q7Z3Y8 459 aa20.81■□□□□ 0.92
CLN3-252ENST00000636907 OSBPL3Q9H4L5 887 aa20.81■□□□□ 0.92
CLN3-252ENST00000636907 CNTNAP4Q9C0A0 1308 aa20.81■□□□□ 0.92
CLN3-252ENST00000636907 PCCAP05165 728 aaPredicted RBP20.8■□□□□ 0.92
CLN3-252ENST00000636907 LMBR1LQ6UX01 489 aa20.8■□□□□ 0.92
CLN3-252ENST00000636907 KLHDC4Q8TBB5 520 aa20.8■□□□□ 0.92
CLN3-252ENST00000636907 BCL11BQ9C0K0 894 aaPredicted RBP20.8■□□□□ 0.92
CLN3-252ENST00000636907 CAMTA2O94983 1202 aa20.8■□□□□ 0.92
CLN3-252ENST00000636907 CCNL1Q9UK58 526 aaPredicted RBP20.8■□□□□ 0.92
CLN3-252ENST00000636907 MX1P20591 662 aa20.79■□□□□ 0.92
CLN3-252ENST00000636907 G3BP1Q13283 466 aaKnown RBP eCLIP20.79■□□□□ 0.92
CLN3-252ENST00000636907 FAM196AQ6ZSG2 479 aa20.79■□□□□ 0.92
CLN3-252ENST00000636907 ERC1Q8IUD2 1116 aa20.79■□□□□ 0.92
CLN3-252ENST00000636907 ZNF34Q8IZ26 560 aa20.79■□□□□ 0.92
CLN3-252ENST00000636907 ZBTB38Q8NAP3 1195 aaPredicted RBP20.79■□□□□ 0.92
CLN3-252ENST00000636907 FAM89AQ96GI7 184 aa20.79■□□□□ 0.92
CLN3-252ENST00000636907 COPRSQ9NQ92 184 aa20.79■□□□□ 0.92
CLN3-252ENST00000636907 PTPN12Q05209 780 aaKnown RBP20.78■□□□□ 0.92
CLN3-252ENST00000636907 SIL1Q9H173 461 aa20.78■□□□□ 0.92
CLN3-252ENST00000636907 RC3H1Q5TC82 1133 aaKnown RBP20.77■□□□□ 0.92
CLN3-252ENST00000636907 TSHZ3Q63HK5 1081 aa20.77■□□□□ 0.92
CLN3-252ENST00000636907 NUTM1Q86Y26 1132 aa20.77■□□□□ 0.92
CLN3-252ENST00000636907 STAP2Q9UGK3 403 aa20.77■□□□□ 0.92
CLN3-252ENST00000636907 CHMP3Q9Y3E7 222 aa20.77■□□□□ 0.92
CLN3-252ENST00000636907 UBN2Q6ZU65 1347 aa20.77■□□□□ 0.92
CLN3-252ENST00000636907 CDHR2Q9BYE9 1310 aa20.77■□□□□ 0.91
CLN3-252ENST00000636907 SASH1O94885 1247 aa20.77■□□□□ 0.91
CLN3-252ENST00000636907 ANP32AP39687 249 aaKnown RBP20.77■□□□□ 0.91
CLN3-252ENST00000636907 PLA2G12BQ9BX93 195 aa20.77■□□□□ 0.91
CLN3-252ENST00000636907 BCORQ6W2J9 1755 aa20.76■□□□□ 0.91
CLN3-252ENST00000636907 TAF1LQ8IZX4 1826 aa20.75■□□□□ 0.91
CLN3-252ENST00000636907 SYNE4Q8N205 404 aa20.75■□□□□ 0.91
CLN3-252ENST00000636907 SDSP20132 328 aa20.74■□□□□ 0.91
CLN3-252ENST00000636907 CLASRPQ8N2M8 674 aaKnown RBP20.74■□□□□ 0.91
CLN3-252ENST00000636907 TRMT112Q9UI30 125 aaKnown RBP20.74■□□□□ 0.91
CLN3-252ENST00000636907 AOX1Q06278 1338 aa20.74■□□□□ 0.91
CLN3-252ENST00000636907 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP20.73■□□□□ 0.91
CLN3-252ENST00000636907 TUBGCP6Q96RT7 1819 aa20.73■□□□□ 0.91
CLN3-252ENST00000636907 CDC45O75419 566 aa20.73■□□□□ 0.91
CLN3-252ENST00000636907 RPS6KA4O75676 772 aa20.73■□□□□ 0.91
CLN3-252ENST00000636907 TBC1D9Q6ZT07 1266 aa20.73■□□□□ 0.91
CLN3-252ENST00000636907 SMIM5Q71RC9 77 aa20.73■□□□□ 0.91
CLN3-252ENST00000636907 GNPATO15228 680 aa20.72■□□□□ 0.91
CLN3-252ENST00000636907 TRIM37O94972 964 aa20.72■□□□□ 0.91
CLN3-252ENST00000636907 SUSD4Q5VX71 490 aa20.72■□□□□ 0.91
CLN3-252ENST00000636907 C4BP0C0L5 1744 aa20.72■□□□□ 0.91
CLN3-252ENST00000636907 IRS4O14654 1257 aaPredicted RBP20.71■□□□□ 0.91
CLN3-252ENST00000636907 ZNF652Q9Y2D9 606 aa20.71■□□□□ 0.91
CLN3-252ENST00000636907 SCN7AQ01118 1682 aa20.71■□□□□ 0.91
CLN3-252ENST00000636907 USP42Q9H9J4 1324 aaKnown RBP20.71■□□□□ 0.91
CLN3-252ENST00000636907 CSF1RP07333 972 aa20.7■□□□□ 0.91
CLN3-252ENST00000636907 MFAP1P55081 439 aaKnown RBP20.7■□□□□ 0.91
CLN3-252ENST00000636907 PARP10Q53GL7 1025 aa20.7■□□□□ 0.91
CLN3-252ENST00000636907 AACSQ86V21 672 aa20.7■□□□□ 0.91
CLN3-252ENST00000636907 UPF2Q9HAU5 1272 aaKnown RBP20.7■□□□□ 0.91
CLN3-252ENST00000636907 LRRC4BQ9NT99 713 aa20.7■□□□□ 0.91
CLN3-252ENST00000636907 RXRBP28702 533 aa20.7■□□□□ 0.9
CLN3-252ENST00000636907 CLEC4GQ6UXB4 293 aa20.7■□□□□ 0.9
CLN3-252ENST00000636907 PI4K2BQ8TCG2 481 aa20.7■□□□□ 0.9
CLN3-252ENST00000636907 FBXO41Q8TF61 875 aa20.7■□□□□ 0.9
CLN3-252ENST00000636907 EAF2Q96CJ1 260 aaPredicted RBP20.7■□□□□ 0.9
CLN3-252ENST00000636907 NIP7Q9Y221 180 aaKnown RBP eCLIP20.7■□□□□ 0.9
CLN3-252ENST00000636907 IFIT2P09913 472 aaKnown RBP20.69■□□□□ 0.9
CLN3-252ENST00000636907 ZNF594Q96JF6 807 aaPredicted RBP20.69■□□□□ 0.9
CLN3-252ENST00000636907 CCDC85AQ96PX6 553 aaPredicted RBP20.69■□□□□ 0.9
CLN3-252ENST00000636907 RTCBQ9Y3I0 505 aaKnown RBP20.69■□□□□ 0.9
CLN3-252ENST00000636907 TTC41PQ6P2S7 1318 aa20.68■□□□□ 0.9
CLN3-252ENST00000636907 FAM177BA6PVY3 158 aa20.68■□□□□ 0.9
CLN3-252ENST00000636907 CTSWP56202 376 aa20.68■□□□□ 0.9
CLN3-252ENST00000636907 TFCP2Q12800 502 aa20.68■□□□□ 0.9
CLN3-252ENST00000636907 AMIGO3Q86WK7 504 aa20.68■□□□□ 0.9
CLN3-252ENST00000636907 UTP14AQ9BVJ6 771 aaKnown RBP20.68■□□□□ 0.9
CLN3-252ENST00000636907 CCDC57Q2TAC2 916 aa20.67■□□□□ 0.9
CLN3-252ENST00000636907 ATG9AQ7Z3C6 839 aa20.67■□□□□ 0.9
CLN3-252ENST00000636907 TTLL11Q8NHH1 800 aa20.67■□□□□ 0.9
CLN3-252ENST00000636907 CCDC8Q9H0W5 538 aaPredicted RBP20.67■□□□□ 0.9
CLN3-252ENST00000636907 NARFQ9UHQ1 456 aa20.67■□□□□ 0.9
CLN3-252ENST00000636907 MYH3P11055 1940 aa20.67■□□□□ 0.9
CLN3-252ENST00000636907 SH3TC1Q8TE82 1336 aa20.67■□□□□ 0.9
CLN3-252ENST00000636907 RGL2O15211 777 aa20.67■□□□□ 0.9
CLN3-252ENST00000636907 PDE8AO60658 829 aa20.67■□□□□ 0.9
CLN3-252ENST00000636907 NTSR2O95665 410 aa20.67■□□□□ 0.9
CLN3-252ENST00000636907 BCL2L12Q9HB09 334 aa20.67■□□□□ 0.9
CLN3-252ENST00000636907 RGS17Q9UGC6 210 aaPredicted RBP20.67■□□□□ 0.9
CLN3-252ENST00000636907 TRIM6-TRIM34B2RNG4 842 aa20.66■□□□□ 0.9
CLN3-252ENST00000636907 EYA2O00167 538 aa20.66■□□□□ 0.9
CLN3-252ENST00000636907 LRRC24Q50LG9 513 aa20.66■□□□□ 0.9
CLN3-252ENST00000636907 USPL1Q5W0Q7 1092 aa20.66■□□□□ 0.9
CLN3-252ENST00000636907 TBC1D32Q96NH3 1257 aa20.66■□□□□ 0.9
CLN3-252ENST00000636907 ECHDC1Q9NTX5 307 aa20.66■□□□□ 0.9
CLN3-252ENST00000636907 TLR7Q9NYK1 1049 aaKnown RBP20.66■□□□□ 0.9
CLN3-252ENST00000636907 SRP68Q9UHB9 627 aaKnown RBP20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms