RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 ZNF165P49910 485 aa16.71■□□□□ 0.27
LDB3-209ENST00000623056 SPATA32Q96LK8 384 aa16.71■□□□□ 0.27
LDB3-209ENST00000623056 SCAND2PQ9GZW5 306 aaPredicted RBP16.71■□□□□ 0.27
LDB3-209ENST00000623056 NPHP3Q7Z494 1330 aa16.71■□□□□ 0.27
LDB3-209ENST00000623056 PDIA4P13667 645 aaKnown RBP16.7■□□□□ 0.26
LDB3-209ENST00000623056 ZNF592Q92610 1267 aa16.7■□□□□ 0.26
LDB3-209ENST00000623056 DNAJC25Q9H1X3 360 aa16.7■□□□□ 0.26
LDB3-209ENST00000623056 NALCNQ8IZF0 1738 aa16.7■□□□□ 0.26
LDB3-209ENST00000623056 TTC41PQ6P2S7 1318 aa16.7■□□□□ 0.26
LDB3-209ENST00000623056 KDRP35968 1356 aa16.7■□□□□ 0.26
LDB3-209ENST00000623056 LRRC37A3O60309 1634 aa16.7■□□□□ 0.26
LDB3-209ENST00000623056 PDCP20941 246 aa16.7■□□□□ 0.26
LDB3-209ENST00000623056 FGD1P98174 961 aa16.7■□□□□ 0.26
LDB3-209ENST00000623056 NECTIN1Q15223 517 aa16.7■□□□□ 0.26
LDB3-209ENST00000623056 TFIP11Q9UBB9 837 aaKnown RBP16.7■□□□□ 0.26
LDB3-209ENST00000623056 USP31Q70CQ4 1352 aa16.69■□□□□ 0.26
LDB3-209ENST00000623056 ZKSCAN1P17029 563 aaPredicted RBP16.69■□□□□ 0.26
LDB3-209ENST00000623056 CDC25BP30305 580 aa16.69■□□□□ 0.26
LDB3-209ENST00000623056 LEO1Q8WVC0 666 aaPredicted RBP16.69■□□□□ 0.26
LDB3-209ENST00000623056 PHAXQ9H814 394 aaKnown RBP16.69■□□□□ 0.26
LDB3-209ENST00000623056 PTPRUQ92729 1446 aa16.69■□□□□ 0.26
LDB3-209ENST00000623056 NUTM2FA1L443 756 aa16.69■□□□□ 0.26
LDB3-209ENST00000623056 NR1I2O75469 434 aa16.69■□□□□ 0.26
LDB3-209ENST00000623056 BCL11BQ9C0K0 894 aaPredicted RBP16.69■□□□□ 0.26
LDB3-209ENST00000623056 ARHGAP23Q9P227 1491 aa16.69■□□□□ 0.26
LDB3-209ENST00000623056 ACEP12821 1306 aa16.69■□□□□ 0.26
LDB3-209ENST00000623056 CHD2O14647 1828 aaKnown RBP16.68■□□□□ 0.26
LDB3-209ENST00000623056 SLIT1O75093 1534 aa16.68■□□□□ 0.26
LDB3-209ENST00000623056 HTATSF1O43719 755 aaKnown RBP16.68■□□□□ 0.26
LDB3-209ENST00000623056 NBPF7P0C2Y1 421 aaPredicted RBP16.68■□□□□ 0.26
LDB3-209ENST00000623056 KMT5BQ4FZB7 885 aa16.68■□□□□ 0.26
LDB3-209ENST00000623056 KRT222Q8N1A0 295 aa16.68■□□□□ 0.26
LDB3-209ENST00000623056 ZNF397Q8NF99 534 aaPredicted RBP16.68■□□□□ 0.26
LDB3-209ENST00000623056 CEP170BQ9Y4F5 1589 aaPredicted RBP16.68■□□□□ 0.26
LDB3-209ENST00000623056 USP27XA6NNY8 438 aa16.68■□□□□ 0.26
LDB3-209ENST00000623056 COL9A3Q14050 684 aaPredicted RBP16.68■□□□□ 0.26
LDB3-209ENST00000623056 TERF2Q15554 542 aa16.68■□□□□ 0.26
LDB3-209ENST00000623056 CREB3L3Q68CJ9 461 aa16.68■□□□□ 0.26
LDB3-209ENST00000623056 LRRC8AQ8IWT6 810 aa16.68■□□□□ 0.26
LDB3-209ENST00000623056 RBM8AQ9Y5S9 174 aaKnown RBP16.68■□□□□ 0.26
LDB3-209ENST00000623056 ADGRL3Q9HAR2 1447 aa16.67■□□□□ 0.26
LDB3-209ENST00000623056 FMN2Q9NZ56 1722 aa16.67■□□□□ 0.26
LDB3-209ENST00000623056 HSP90AB4PQ58FF6 505 aa16.67■□□□□ 0.26
LDB3-209ENST00000623056 THEMISQ8N1K5 641 aaPredicted RBP16.67■□□□□ 0.26
LDB3-209ENST00000623056 EYA1Q99502 592 aa16.67■□□□□ 0.26
LDB3-209ENST00000623056 ZNF215Q9UL58 517 aaPredicted RBP16.67■□□□□ 0.26
LDB3-209ENST00000623056 OS9Q13438 667 aaPredicted RBP16.67■□□□□ 0.26
LDB3-209ENST00000623056 LARP1Q6PKG0 1096 aaKnown RBP16.67■□□□□ 0.26
LDB3-209ENST00000623056 BICD2Q8TD16 824 aa16.67■□□□□ 0.26
LDB3-209ENST00000623056 SIRT1Q96EB6 747 aa16.67■□□□□ 0.26
LDB3-209ENST00000623056 PGBD1Q96JS3 809 aa16.67■□□□□ 0.26
LDB3-209ENST00000623056 ADAMTSL3P82987 1691 aa16.66■□□□□ 0.26
LDB3-209ENST00000623056 GNAT3A8MTJ3 354 aa16.66■□□□□ 0.26
LDB3-209ENST00000623056 RBM6P78332 1123 aaKnown RBP16.66■□□□□ 0.26
LDB3-209ENST00000623056 ARID5BQ14865 1188 aa16.66■□□□□ 0.26
LDB3-209ENST00000623056 HDGFL1Q5TGJ6 251 aa16.66■□□□□ 0.26
LDB3-209ENST00000623056 NYAP1Q6ZVC0 841 aa16.66■□□□□ 0.26
LDB3-209ENST00000623056 BBXQ8WY36 941 aaPredicted RBP16.66■□□□□ 0.26
LDB3-209ENST00000623056 USP6P35125 1406 aa16.66■□□□□ 0.26
LDB3-209ENST00000623056 KCNJ4P48050 445 aa16.65■□□□□ 0.26
LDB3-209ENST00000623056 ECHDC1Q9NTX5 307 aa16.65■□□□□ 0.26
LDB3-209ENST00000623056 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.65■□□□□ 0.26
LDB3-209ENST00000623056 V9GYY5 206 aaPredicted RBP16.65■□□□□ 0.26
LDB3-209ENST00000623056 IGSF1Q8N6C5 1336 aa16.65■□□□□ 0.26
LDB3-209ENST00000623056 GTF2E1P29083 439 aaPredicted RBP16.65■□□□□ 0.26
LDB3-209ENST00000623056 PTPN14Q15678 1187 aa16.65■□□□□ 0.26
LDB3-209ENST00000623056 SARM1Q6SZW1 724 aa16.65■□□□□ 0.26
LDB3-209ENST00000623056 TCEANC2Q96MN5 208 aa16.65■□□□□ 0.26
LDB3-209ENST00000623056 FAM53CQ9NYF3 392 aa16.65■□□□□ 0.26
LDB3-209ENST00000623056 AMOTL2Q9Y2J4 779 aa16.65■□□□□ 0.26
LDB3-209ENST00000623056 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.65■□□□□ 0.26
LDB3-209ENST00000623056 SLC27A2O14975 620 aa16.64■□□□□ 0.25
LDB3-209ENST00000623056 NEMFO60524 1076 aa16.64■□□□□ 0.25
LDB3-209ENST00000623056 CAVIN2O95810 425 aa16.64■□□□□ 0.25
LDB3-209ENST00000623056 PSMA5P28066 241 aa16.64■□□□□ 0.25
LDB3-209ENST00000623056 IQCB1Q15051 598 aa16.64■□□□□ 0.25
LDB3-209ENST00000623056 CLASRPQ8N2M8 674 aaKnown RBP16.64■□□□□ 0.25
LDB3-209ENST00000623056 TMEM51Q9NW97 253 aa16.64■□□□□ 0.25
LDB3-209ENST00000623056 FLT4P35916 1363 aa16.64■□□□□ 0.25
LDB3-209ENST00000623056 SBNO1A3KN83 1393 aa16.64■□□□□ 0.25
LDB3-209ENST00000623056 IL17REQ8NFR9 667 aa16.64■□□□□ 0.25
LDB3-209ENST00000623056 MAP4K1Q92918 833 aa16.64■□□□□ 0.25
LDB3-209ENST00000623056 MRFAP1L1Q96HT8 127 aa16.64■□□□□ 0.25
LDB3-209ENST00000623056 GOLGA6L19H0YKK7 550 aa16.63■□□□□ 0.25
LDB3-209ENST00000623056 SKILP12757 684 aa16.63■□□□□ 0.25
LDB3-209ENST00000623056 FBXO38Q6PIJ6 1188 aa16.63■□□□□ 0.25
LDB3-209ENST00000623056 EVI5LQ96CN4 794 aa16.63■□□□□ 0.25
LDB3-209ENST00000623056 FAM227BQ96M60 508 aa16.63■□□□□ 0.25
LDB3-209ENST00000623056 PLEKHG3A1L390 1219 aa16.63■□□□□ 0.25
LDB3-209ENST00000623056 ANKRD1Q15327 319 aa16.63■□□□□ 0.25
LDB3-209ENST00000623056 TAF7Q15545 349 aaPredicted RBP16.63■□□□□ 0.25
LDB3-209ENST00000623056 ELF2Q15723 593 aa16.63■□□□□ 0.25
LDB3-209ENST00000623056 BLOC1S2Q6QNY1 142 aa16.63■□□□□ 0.25
LDB3-209ENST00000623056 C11orf57Q6ZUT1 292 aaPredicted RBP16.63■□□□□ 0.25
LDB3-209ENST00000623056 ERO1AQ96HE7 468 aa16.63■□□□□ 0.25
LDB3-209ENST00000623056 BEND3Q5T5X7 828 aa16.62■□□□□ 0.25
LDB3-209ENST00000623056 ERBB3P21860 1342 aa16.62■□□□□ 0.25
LDB3-209ENST00000623056 RPS6KB1P23443 525 aa16.62■□□□□ 0.25
LDB3-209ENST00000623056 NMIQ13287 307 aaPredicted RBP16.62■□□□□ 0.25
LDB3-209ENST00000623056 TOB2Q14106 344 aaPredicted RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms