RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 SSH3Q8TE77 659 aa12.86□□□□□ -0.35
VPS11-208ENST00000621676 PALD1Q9ULE6 856 aa12.86□□□□□ -0.35
VPS11-208ENST00000621676 GOLIM4O00461 696 aa12.86□□□□□ -0.35
VPS11-208ENST00000621676 CYP19A1P11511 503 aaPredicted RBP12.86□□□□□ -0.35
VPS11-208ENST00000621676 BMP2KLQ5H9B9 411 aa12.86□□□□□ -0.35
VPS11-208ENST00000621676 DIAPH3Q9NSV4 1193 aa12.86□□□□□ -0.35
VPS11-208ENST00000621676 ADORA1P30542 326 aa12.85□□□□□ -0.35
VPS11-208ENST00000621676 NEK4P51957 841 aa12.85□□□□□ -0.35
VPS11-208ENST00000621676 COL9A3Q14050 684 aaPredicted RBP12.85□□□□□ -0.35
VPS11-208ENST00000621676 CCNL1Q9UK58 526 aaPredicted RBP12.85□□□□□ -0.35
VPS11-208ENST00000621676 IRS4O14654 1257 aaPredicted RBP12.85□□□□□ -0.35
VPS11-208ENST00000621676 CASC1Q6TDU7 716 aa12.85□□□□□ -0.35
VPS11-208ENST00000621676 TBC1D32Q96NH3 1257 aa12.85□□□□□ -0.35
VPS11-208ENST00000621676 USPL1Q5W0Q7 1092 aa12.85□□□□□ -0.35
VPS11-208ENST00000621676 LRRC2Q9BYS8 371 aa12.85□□□□□ -0.35
VPS11-208ENST00000621676 ANTXR1Q9H6X2 564 aa12.85□□□□□ -0.35
VPS11-208ENST00000621676 OVOS2A0A0G2JMS6 1433 aa12.84□□□□□ -0.35
VPS11-208ENST00000621676 RAB11FIP4Q86YS3 637 aa12.84□□□□□ -0.35
VPS11-208ENST00000621676 PTPN12Q05209 780 aaKnown RBP12.84□□□□□ -0.35
VPS11-208ENST00000621676 HSCBQ8IWL3 235 aa12.84□□□□□ -0.35
VPS11-208ENST00000621676 METTL24Q5JXM2 366 aa12.83□□□□□ -0.35
VPS11-208ENST00000621676 SUSD4Q5VX71 490 aa12.83□□□□□ -0.35
VPS11-208ENST00000621676 KLHL34Q8N239 644 aa12.83□□□□□ -0.35
VPS11-208ENST00000621676 GPR101Q96P66 508 aaPredicted RBP12.83□□□□□ -0.35
VPS11-208ENST00000621676 TCIRG1Q13488 830 aa12.83□□□□□ -0.36
VPS11-208ENST00000621676 LRP10Q7Z4F1 713 aa12.83□□□□□ -0.36
VPS11-208ENST00000621676 SPATA31A5Q5VU36 1347 aa12.83□□□□□ -0.36
VPS11-208ENST00000621676 SPATA31A7Q8IWB4 1347 aa12.83□□□□□ -0.36
VPS11-208ENST00000621676 HOXB7P09629 217 aa12.83□□□□□ -0.36
VPS11-208ENST00000621676 ITGA6P23229 1130 aa12.83□□□□□ -0.36
VPS11-208ENST00000621676 CHST3Q7LGC8 479 aa12.83□□□□□ -0.36
VPS11-208ENST00000621676 DDRGK1Q96HY6 314 aa12.83□□□□□ -0.36
VPS11-208ENST00000621676 GJD4Q96KN9 370 aaPredicted RBP12.83□□□□□ -0.36
VPS11-208ENST00000621676 PPP1R1BQ9UD71 204 aaPredicted RBP12.83□□□□□ -0.36
VPS11-208ENST00000621676 ALDH1L1O75891 902 aa12.82□□□□□ -0.36
VPS11-208ENST00000621676 IFIT5Q13325 482 aaKnown RBP12.82□□□□□ -0.36
VPS11-208ENST00000621676 AAMPQ13685 434 aa12.82□□□□□ -0.36
VPS11-208ENST00000621676 LINC00116Q8NCU8 138 aa12.82□□□□□ -0.36
VPS11-208ENST00000621676 DBNLQ9UJU6 430 aaKnown RBP12.82□□□□□ -0.36
VPS11-208ENST00000621676 SLIT3O75094 1523 aa12.82□□□□□ -0.36
VPS11-208ENST00000621676 MARF1Q9Y4F3 1742 aaKnown RBP12.82□□□□□ -0.36
VPS11-208ENST00000621676 BECN1Q14457 450 aa12.82□□□□□ -0.36
VPS11-208ENST00000621676 WASHC4Q2M389 1173 aa12.82□□□□□ -0.36
VPS11-208ENST00000621676 FAM196AQ6ZSG2 479 aa12.82□□□□□ -0.36
VPS11-208ENST00000621676 KIAA1211Q6ZU35 1233 aa12.82□□□□□ -0.36
VPS11-208ENST00000621676 BABAM1Q9NWV8 329 aa12.82□□□□□ -0.36
VPS11-208ENST00000621676 PRPF40BQ6NWY9 871 aaKnown RBP12.82□□□□□ -0.36
VPS11-208ENST00000621676 PALLDQ8WX93 1383 aa12.81□□□□□ -0.36
VPS11-208ENST00000621676 ROBO1Q9Y6N7 1651 aa12.81□□□□□ -0.36
VPS11-208ENST00000621676 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.81□□□□□ -0.36
VPS11-208ENST00000621676 HAND2P61296 217 aa12.81□□□□□ -0.36
VPS11-208ENST00000621676 STK3Q13188 491 aa12.81□□□□□ -0.36
VPS11-208ENST00000621676 CCDC87Q9NVE4 849 aa12.81□□□□□ -0.36
VPS11-208ENST00000621676 CEP126Q9P2H0 1117 aa12.81□□□□□ -0.36
VPS11-208ENST00000621676 C3orf67Q6ZVT6 689 aa12.8□□□□□ -0.36
VPS11-208ENST00000621676 MPHOSPH8Q99549 860 aa12.8□□□□□ -0.36
VPS11-208ENST00000621676 ECHDC1Q9NTX5 307 aa12.8□□□□□ -0.36
VPS11-208ENST00000621676 TAF6LQ9Y6J9 622 aa12.8□□□□□ -0.36
VPS11-208ENST00000621676 IBTKQ9P2D0 1353 aaPredicted RBP12.8□□□□□ -0.36
VPS11-208ENST00000621676 A0A0G2JLW4 131 aa12.8□□□□□ -0.36
VPS11-208ENST00000621676 IDH1O75874 414 aaKnown RBP12.8□□□□□ -0.36
VPS11-208ENST00000621676 CHMLP26374 656 aa12.8□□□□□ -0.36
VPS11-208ENST00000621676 PTH1RQ03431 593 aa12.8□□□□□ -0.36
VPS11-208ENST00000621676 NLRP10Q86W26 655 aa12.8□□□□□ -0.36
VPS11-208ENST00000621676 ABCF2Q9UG63 623 aa12.8□□□□□ -0.36
VPS11-208ENST00000621676 ZGPATQ8N5A5 531 aaKnown RBP12.8□□□□□ -0.36
VPS11-208ENST00000621676 UBN2Q6ZU65 1347 aa12.79□□□□□ -0.36
VPS11-208ENST00000621676 A0A1B0GUL7 405 aa12.79□□□□□ -0.36
VPS11-208ENST00000621676 NCLP19338 710 aaKnown RBP12.79□□□□□ -0.36
VPS11-208ENST00000621676 RGPD1P0DJD0 1748 aa12.79□□□□□ -0.36
VPS11-208ENST00000621676 XIRP1Q702N8 1843 aaKnown RBP12.79□□□□□ -0.36
VPS11-208ENST00000621676 ERC2O15083 957 aa12.79□□□□□ -0.36
VPS11-208ENST00000621676 ZPR1O75312 459 aa12.79□□□□□ -0.36
VPS11-208ENST00000621676 APPP05067 770 aa12.79□□□□□ -0.36
VPS11-208ENST00000621676 FOXO4P98177 505 aa12.79□□□□□ -0.36
VPS11-208ENST00000621676 SCARF1Q14162 830 aa12.79□□□□□ -0.36
VPS11-208ENST00000621676 NFKBIBQ15653 356 aa12.79□□□□□ -0.36
VPS11-208ENST00000621676 INTS5Q6P9B9 1019 aaKnown RBP12.79□□□□□ -0.36
VPS11-208ENST00000621676 CHMP4AQ9BY43 222 aa12.79□□□□□ -0.36
VPS11-208ENST00000621676 PKP1Q13835 747 aa12.78□□□□□ -0.36
VPS11-208ENST00000621676 GIGYF2Q6Y7W6 1299 aaKnown RBP12.78□□□□□ -0.36
VPS11-208ENST00000621676 RFC4P35249 363 aa12.78□□□□□ -0.36
VPS11-208ENST00000621676 NKX1-1Q15270 411 aaPredicted RBP12.78□□□□□ -0.36
VPS11-208ENST00000621676 TRPM3Q9HCF6 1732 aaPredicted RBP12.78□□□□□ -0.36
VPS11-208ENST00000621676 NMIQ13287 307 aaPredicted RBP12.78□□□□□ -0.36
VPS11-208ENST00000621676 POLA2Q14181 598 aa12.78□□□□□ -0.36
VPS11-208ENST00000621676 ERFEQ4G0M1 354 aa12.78□□□□□ -0.36
VPS11-208ENST00000621676 TNNI3KQ59H18 835 aa12.78□□□□□ -0.36
VPS11-208ENST00000621676 TBC1D9BQ66K14 1250 aa12.78□□□□□ -0.36
VPS11-208ENST00000621676 CNTROBQ8N137 903 aa12.78□□□□□ -0.36
VPS11-208ENST00000621676 FPGT-TNNI3KV9GXZ4 949 aa12.78□□□□□ -0.36
VPS11-208ENST00000621676 MAP3K15Q6ZN16 1313 aa12.77□□□□□ -0.36
VPS11-208ENST00000621676 A0A0D9SFI3 127 aa12.77□□□□□ -0.36
VPS11-208ENST00000621676 FGD1P98174 961 aa12.77□□□□□ -0.36
VPS11-208ENST00000621676 RASEFQ8IZ41 740 aa12.77□□□□□ -0.36
VPS11-208ENST00000621676 PI4K2BQ8TCG2 481 aa12.77□□□□□ -0.36
VPS11-208ENST00000621676 FBXW7Q969H0 707 aa12.77□□□□□ -0.36
VPS11-208ENST00000621676 LRRC4BQ9NT99 713 aa12.77□□□□□ -0.36
VPS11-208ENST00000621676 TFCP2L1Q9NZI6 479 aa12.77□□□□□ -0.36
VPS11-208ENST00000621676 ZNF589Q86UQ0 364 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms