RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 UBN2Q6ZU65 1347 aa18.53■□□□□ 0.56
CD48-203ENST00000613788 NEFLP07196 543 aa18.53■□□□□ 0.56
CD48-203ENST00000613788 UTP14AQ9BVJ6 771 aaKnown RBP18.53■□□□□ 0.56
CD48-203ENST00000613788 NYXQ9GZU5 481 aa18.53■□□□□ 0.56
CD48-203ENST00000613788 GRM8O00222 908 aa18.52■□□□□ 0.56
CD48-203ENST00000613788 SUSD4Q5VX71 490 aa18.52■□□□□ 0.56
CD48-203ENST00000613788 MSL1Q68DK7 614 aa18.52■□□□□ 0.56
CD48-203ENST00000613788 TPTE2Q6XPS3 522 aa18.52■□□□□ 0.56
CD48-203ENST00000613788 TRMT112Q9UI30 125 aaKnown RBP18.52■□□□□ 0.56
CD48-203ENST00000613788 HDAC5Q9UQL6 1122 aa18.52■□□□□ 0.56
CD48-203ENST00000613788 CARMIL3Q8ND23 1372 aa18.51■□□□□ 0.55
CD48-203ENST00000613788 ZBTB7BO15156 539 aaPredicted RBP18.51■□□□□ 0.55
CD48-203ENST00000613788 GNAI3P08754 354 aa18.51■□□□□ 0.55
CD48-203ENST00000613788 NBPF5PQ86XG9 351 aaPredicted RBP18.51■□□□□ 0.55
CD48-203ENST00000613788 ZBTB38Q8NAP3 1195 aaPredicted RBP18.51■□□□□ 0.55
CD48-203ENST00000613788 MTFR1LQ9H019 292 aa18.51■□□□□ 0.55
CD48-203ENST00000613788 USP44Q9H0E7 712 aa18.51■□□□□ 0.55
CD48-203ENST00000613788 FAM177BA6PVY3 158 aa18.5■□□□□ 0.55
CD48-203ENST00000613788 H7C1W4 665 aa18.5■□□□□ 0.55
CD48-203ENST00000613788 PCCAP05165 728 aaPredicted RBP18.5■□□□□ 0.55
CD48-203ENST00000613788 MMP10P09238 476 aa18.5■□□□□ 0.55
CD48-203ENST00000613788 GTF2E1P29083 439 aaPredicted RBP18.5■□□□□ 0.55
CD48-203ENST00000613788 CRBNQ96SW2 442 aa18.5■□□□□ 0.55
CD48-203ENST00000613788 PARP3Q9Y6F1 533 aa18.5■□□□□ 0.55
CD48-203ENST00000613788 NPHP1O15259 732 aa18.49■□□□□ 0.55
CD48-203ENST00000613788 SERPINB2P05120 415 aa18.49■□□□□ 0.55
CD48-203ENST00000613788 IRX6P78412 446 aaPredicted RBP18.49■□□□□ 0.55
CD48-203ENST00000613788 ANKRD36CQ5JPF3 1778 aa18.49■□□□□ 0.55
CD48-203ENST00000613788 UTYO14607 1347 aa18.49■□□□□ 0.55
CD48-203ENST00000613788 POLRMTO00411 1230 aaKnown RBP18.49■□□□□ 0.55
CD48-203ENST00000613788 ZBTB7AO95365 584 aa18.49■□□□□ 0.55
CD48-203ENST00000613788 HSP90B1P14625 803 aaKnown RBP18.49■□□□□ 0.55
CD48-203ENST00000613788 FAM89AQ96GI7 184 aa18.49■□□□□ 0.55
CD48-203ENST00000613788 MEIS3Q99687 375 aa18.49■□□□□ 0.55
CD48-203ENST00000613788 SH3TC1Q8TE82 1336 aa18.48■□□□□ 0.55
CD48-203ENST00000613788 NTSR2O95665 410 aa18.48■□□□□ 0.55
CD48-203ENST00000613788 NBPF7P0C2Y1 421 aaPredicted RBP18.48■□□□□ 0.55
CD48-203ENST00000613788 UBTFL1P0CB47 393 aaPredicted RBP18.48■□□□□ 0.55
CD48-203ENST00000613788 DDR1Q08345 913 aa18.48■□□□□ 0.55
CD48-203ENST00000613788 UBE3BQ7Z3V4 1068 aa18.48■□□□□ 0.55
CD48-203ENST00000613788 AAMPQ13685 434 aa18.47■□□□□ 0.55
CD48-203ENST00000613788 RTL5Q5HYW3 569 aaPredicted RBP18.47■□□□□ 0.55
CD48-203ENST00000613788 CNBD1Q8NA66 436 aa18.47■□□□□ 0.55
CD48-203ENST00000613788 N4BP2Q86UW6 1770 aaPredicted RBP18.46■□□□□ 0.55
CD48-203ENST00000613788 POLD1P28340 1107 aa18.46■□□□□ 0.55
CD48-203ENST00000613788 ATF5Q9Y2D1 282 aaPredicted RBP18.46■□□□□ 0.55
CD48-203ENST00000613788 CDHR2Q9BYE9 1310 aa18.46■□□□□ 0.54
CD48-203ENST00000613788 CASZ1Q86V15 1759 aa18.46■□□□□ 0.54
CD48-203ENST00000613788 IRS4O14654 1257 aaPredicted RBP18.45■□□□□ 0.54
CD48-203ENST00000613788 GNAI2P04899 355 aa18.45■□□□□ 0.54
CD48-203ENST00000613788 CASP7P55210 303 aa18.45■□□□□ 0.54
CD48-203ENST00000613788 NUTM1Q86Y26 1132 aa18.45■□□□□ 0.54
CD48-203ENST00000613788 EXOC6Q8TAG9 804 aa18.45■□□□□ 0.54
CD48-203ENST00000613788 JARID2Q92833 1246 aaPredicted RBP18.45■□□□□ 0.54
CD48-203ENST00000613788 ZBTB40Q9NUA8 1239 aa18.45■□□□□ 0.54
CD48-203ENST00000613788 AFDNP55196 1824 aaKnown RBP18.45■□□□□ 0.54
CD48-203ENST00000613788 ST5P78524 1137 aa18.44■□□□□ 0.54
CD48-203ENST00000613788 ERFEQ4G0M1 354 aa18.44■□□□□ 0.54
CD48-203ENST00000613788 SLC10A5Q5PT55 438 aa18.44■□□□□ 0.54
CD48-203ENST00000613788 PRR5LQ6MZQ0 368 aa18.44■□□□□ 0.54
CD48-203ENST00000613788 SYNE4Q8N205 404 aa18.44■□□□□ 0.54
CD48-203ENST00000613788 PDE8AO60658 829 aa18.43■□□□□ 0.54
CD48-203ENST00000613788 PLA2G12BQ9BX93 195 aa18.43■□□□□ 0.54
CD48-203ENST00000613788 COL24A1Q17RW2 1714 aa18.42■□□□□ 0.54
CD48-203ENST00000613788 SUCLG2Q96I99 432 aa18.42■□□□□ 0.54
CD48-203ENST00000613788 SPON1Q9HCB6 807 aa18.42■□□□□ 0.54
CD48-203ENST00000613788 LRRFIP2Q9Y608 721 aaKnown RBP18.42■□□□□ 0.54
CD48-203ENST00000613788 HCLS1P14317 486 aaPredicted RBP18.41■□□□□ 0.54
CD48-203ENST00000613788 NLRP3Q96P20 1036 aa18.41■□□□□ 0.54
CD48-203ENST00000613788 FOXO4P98177 505 aa18.39■□□□□ 0.54
CD48-203ENST00000613788 ERICH6BQ5W0A0 696 aa18.39■□□□□ 0.54
CD48-203ENST00000613788 CCDC24Q8N4L8 307 aa18.39■□□□□ 0.54
CD48-203ENST00000613788 KAZALD1Q96I82 304 aa18.39■□□□□ 0.54
CD48-203ENST00000613788 BRIP1Q9BX63 1249 aa18.39■□□□□ 0.54
CD48-203ENST00000613788 BICC1Q9H694 974 aaKnown RBP18.39■□□□□ 0.54
CD48-203ENST00000613788 RPAP2Q8IXW5 612 aaPredicted RBP18.39■□□□□ 0.53
CD48-203ENST00000613788 SGIP1Q9BQI5 828 aa18.39■□□□□ 0.53
CD48-203ENST00000613788 C1orf115Q9H7X2 142 aa18.39■□□□□ 0.53
CD48-203ENST00000613788 ABCC12Q96J65 1359 aa18.38■□□□□ 0.53
CD48-203ENST00000613788 PDE6BP35913 854 aa18.38■□□□□ 0.53
CD48-203ENST00000613788 PTGER2P43116 358 aa18.38■□□□□ 0.53
CD48-203ENST00000613788 CTSWP56202 376 aa18.38■□□□□ 0.53
CD48-203ENST00000613788 RABL6Q3YEC7 729 aaPredicted RBP18.38■□□□□ 0.53
CD48-203ENST00000613788 EPHA10Q5JZY3 1008 aa18.38■□□□□ 0.53
CD48-203ENST00000613788 LMBR1LQ6UX01 489 aa18.38■□□□□ 0.53
CD48-203ENST00000613788 RIC1Q4ADV7 1423 aa18.37■□□□□ 0.53
CD48-203ENST00000613788 CSF1RP07333 972 aa18.37■□□□□ 0.53
CD48-203ENST00000613788 SF3B3Q15393 1217 aaKnown RBP18.37■□□□□ 0.53
CD48-203ENST00000613788 TTLL11Q8NHH1 800 aa18.37■□□□□ 0.53
CD48-203ENST00000613788 NRXN2Q9P2S2 1712 aa18.37■□□□□ 0.53
CD48-203ENST00000613788 ATP8B2P98198 1209 aa18.36■□□□□ 0.53
CD48-203ENST00000613788 CCDC152Q4G0S7 254 aa18.36■□□□□ 0.53
CD48-203ENST00000613788 ANKRD44Q8N8A2 993 aa18.36■□□□□ 0.53
CD48-203ENST00000613788 PDZRN3Q9UPQ7 1066 aa18.36■□□□□ 0.53
CD48-203ENST00000613788 MTX1Q13505 466 aa18.35■□□□□ 0.53
CD48-203ENST00000613788 CEP85Q6P2H3 762 aa18.35■□□□□ 0.53
CD48-203ENST00000613788 CHMP3Q9Y3E7 222 aa18.35■□□□□ 0.53
CD48-203ENST00000613788 KLRG2A4D1S0 409 aaPredicted RBP18.34■□□□□ 0.53
CD48-203ENST00000613788 SRGAP3O43295 1099 aa18.33■□□□□ 0.53
CD48-203ENST00000613788 HMMRO75330 724 aa18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms