RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 UBN2Q6ZU65 1347 aa17.76■□□□□ 0.43
USP39-220ENST00000613444 SLC27A3Q5K4L6 730 aa17.76■□□□□ 0.43
USP39-220ENST00000613444 SMIM5Q71RC9 77 aa17.76■□□□□ 0.43
USP39-220ENST00000613444 GPTP24298 496 aa17.75■□□□□ 0.43
USP39-220ENST00000613444 EXOC6BQ9Y2D4 811 aa17.75■□□□□ 0.43
USP39-220ENST00000613444 FOXO4P98177 505 aa17.74■□□□□ 0.43
USP39-220ENST00000613444 RGPD3A6NKT7 1758 aaPredicted RBP17.74■□□□□ 0.43
USP39-220ENST00000613444 RGPD4Q7Z3J3 1758 aa17.74■□□□□ 0.43
USP39-220ENST00000613444 MYH3P11055 1940 aa17.74■□□□□ 0.43
USP39-220ENST00000613444 PLSCR1O15162 318 aa17.74■□□□□ 0.43
USP39-220ENST00000613444 GNPATO15228 680 aa17.74■□□□□ 0.43
USP39-220ENST00000613444 PCCAP05165 728 aaPredicted RBP17.74■□□□□ 0.43
USP39-220ENST00000613444 RTL5Q5HYW3 569 aaPredicted RBP17.73■□□□□ 0.43
USP39-220ENST00000613444 ZBTB38Q8NAP3 1195 aaPredicted RBP17.73■□□□□ 0.43
USP39-220ENST00000613444 RGL2O15211 777 aa17.73■□□□□ 0.43
USP39-220ENST00000613444 NOP58Q9Y2X3 529 aaKnown RBP17.73■□□□□ 0.43
USP39-220ENST00000613444 TXNRD1Q16881 649 aa17.72■□□□□ 0.43
USP39-220ENST00000613444 CLEC4GQ6UXB4 293 aa17.72■□□□□ 0.43
USP39-220ENST00000613444 RTCBQ9Y3I0 505 aaKnown RBP17.72■□□□□ 0.43
USP39-220ENST00000613444 SMARCA5O60264 1052 aaPredicted RBP17.72■□□□□ 0.43
USP39-220ENST00000613444 FAM89AQ96GI7 184 aa17.72■□□□□ 0.43
USP39-220ENST00000613444 BCL2L12Q9HB09 334 aa17.72■□□□□ 0.43
USP39-220ENST00000613444 RFX5P48382 616 aaPredicted RBP17.71■□□□□ 0.43
USP39-220ENST00000613444 SYNE4Q8N205 404 aa17.71■□□□□ 0.43
USP39-220ENST00000613444 PLA2G12BQ9BX93 195 aa17.71■□□□□ 0.43
USP39-220ENST00000613444 NARFQ9UHQ1 456 aa17.71■□□□□ 0.43
USP39-220ENST00000613444 CDHR2Q9BYE9 1310 aa17.71■□□□□ 0.43
USP39-220ENST00000613444 APBB1O00213 710 aa17.7■□□□□ 0.42
USP39-220ENST00000613444 SURF6O75683 361 aaKnown RBP17.7■□□□□ 0.42
USP39-220ENST00000613444 APBA3O96018 575 aa17.7■□□□□ 0.42
USP39-220ENST00000613444 ARHGEF1Q92888 912 aaKnown RBP17.7■□□□□ 0.42
USP39-220ENST00000613444 TSHZ2Q9NRE2 1034 aa17.7■□□□□ 0.42
USP39-220ENST00000613444 PA2G4Q9UQ80 394 aaKnown RBP17.7■□□□□ 0.42
USP39-220ENST00000613444 DDX60Q8IY21 1712 aaKnown RBP17.7■□□□□ 0.42
USP39-220ENST00000613444 SUSD4Q5VX71 490 aa17.69■□□□□ 0.42
USP39-220ENST00000613444 LMBR1LQ6UX01 489 aa17.69■□□□□ 0.42
USP39-220ENST00000613444 C16orf71Q8IYS4 520 aaPredicted RBP17.69■□□□□ 0.42
USP39-220ENST00000613444 AK7Q96M32 723 aa17.69■□□□□ 0.42
USP39-220ENST00000613444 COL24A1Q17RW2 1714 aa17.69■□□□□ 0.42
USP39-220ENST00000613444 LAMB2P55268 1798 aa17.69■□□□□ 0.42
USP39-220ENST00000613444 RAB11FIP3O75154 756 aa17.69■□□□□ 0.42
USP39-220ENST00000613444 LRRCC1Q9C099 1032 aa17.69■□□□□ 0.42
USP39-220ENST00000613444 SRP68Q9UHB9 627 aaKnown RBP17.69■□□□□ 0.42
USP39-220ENST00000613444 ZNF652Q9Y2D9 606 aa17.69■□□□□ 0.42
USP39-220ENST00000613444 PARP10Q53GL7 1025 aa17.68■□□□□ 0.42
USP39-220ENST00000613444 USPL1Q5W0Q7 1092 aa17.68■□□□□ 0.42
USP39-220ENST00000613444 NIP7Q9Y221 180 aaKnown RBP eCLIP17.68■□□□□ 0.42
USP39-220ENST00000613444 TUBGCP6Q96RT7 1819 aa17.68■□□□□ 0.42
USP39-220ENST00000613444 PLEKHM2Q8IWE5 1019 aa17.67■□□□□ 0.42
USP39-220ENST00000613444 OTUD7AQ8TE49 926 aaPredicted RBP17.67■□□□□ 0.42
USP39-220ENST00000613444 COPRSQ9NQ92 184 aa17.67■□□□□ 0.42
USP39-220ENST00000613444 TRMT112Q9UI30 125 aaKnown RBP17.67■□□□□ 0.42
USP39-220ENST00000613444 PTPN12Q05209 780 aaKnown RBP17.67■□□□□ 0.42
USP39-220ENST00000613444 KLHDC4Q8TBB5 520 aa17.67■□□□□ 0.42
USP39-220ENST00000613444 SALL3Q9BXA9 1300 aa17.67■□□□□ 0.42
USP39-220ENST00000613444 USP42Q9H9J4 1324 aaKnown RBP17.67■□□□□ 0.42
USP39-220ENST00000613444 NTSR2O95665 410 aa17.66■□□□□ 0.42
USP39-220ENST00000613444 CSF1RP07333 972 aa17.66■□□□□ 0.42
USP39-220ENST00000613444 ADRA2BP18089 450 aa17.66■□□□□ 0.42
USP39-220ENST00000613444 TRAPPC3LQ5T215 181 aa17.66■□□□□ 0.42
USP39-220ENST00000613444 RHPN1Q8TCX5 695 aa17.66■□□□□ 0.42
USP39-220ENST00000613444 CASZ1Q86V15 1759 aa17.66■□□□□ 0.42
USP39-220ENST00000613444 HSP90AB4PQ58FF6 505 aa17.66■□□□□ 0.42
USP39-220ENST00000613444 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.65■□□□□ 0.42
USP39-220ENST00000613444 IRS4O14654 1257 aaPredicted RBP17.65■□□□□ 0.42
USP39-220ENST00000613444 PHF14O94880 888 aa17.65■□□□□ 0.42
USP39-220ENST00000613444 TBC1D9BQ66K14 1250 aa17.65■□□□□ 0.42
USP39-220ENST00000613444 KIF1BPQ96EK5 621 aa17.65■□□□□ 0.42
USP39-220ENST00000613444 UTP14AQ9BVJ6 771 aaKnown RBP17.65■□□□□ 0.42
USP39-220ENST00000613444 ZPR1O75312 459 aa17.64■□□□□ 0.42
USP39-220ENST00000613444 C8orf34Q49A92 452 aa17.64■□□□□ 0.42
USP39-220ENST00000613444 SASH1O94885 1247 aa17.64■□□□□ 0.41
USP39-220ENST00000613444 SSFA2P28290 1259 aa17.64■□□□□ 0.41
USP39-220ENST00000613444 ILDR1Q86SU0 546 aaPredicted RBP17.64■□□□□ 0.41
USP39-220ENST00000613444 SH3TC1Q8TE82 1336 aa17.64■□□□□ 0.41
USP39-220ENST00000613444 BACH2Q9BYV9 841 aa17.64■□□□□ 0.41
USP39-220ENST00000613444 ZBTB47Q9UFB7 747 aaPredicted RBP17.64■□□□□ 0.41
USP39-220ENST00000613444 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.64■□□□□ 0.41
USP39-220ENST00000613444 RFC4P35249 363 aa17.63■□□□□ 0.41
USP39-220ENST00000613444 TTLL11Q8NHH1 800 aa17.63■□□□□ 0.41
USP39-220ENST00000613444 AKT1S1Q96B36 256 aa17.63■□□□□ 0.41
USP39-220ENST00000613444 IL1RAPL2Q9NP60 686 aa17.63■□□□□ 0.41
USP39-220ENST00000613444 HMGB2P26583 209 aaKnown RBP17.63■□□□□ 0.41
USP39-220ENST00000613444 ZNF827Q17R98 1081 aa17.63■□□□□ 0.41
USP39-220ENST00000613444 PDE8AO60658 829 aa17.62■□□□□ 0.41
USP39-220ENST00000613444 CTSWP56202 376 aa17.62■□□□□ 0.41
USP39-220ENST00000613444 FAM161AQ3B820 660 aa17.62■□□□□ 0.41
USP39-220ENST00000613444 ERC1Q8IUD2 1116 aa17.62■□□□□ 0.41
USP39-220ENST00000613444 SIL1Q9H173 461 aa17.62■□□□□ 0.41
USP39-220ENST00000613444 FAM177BA6PVY3 158 aa17.62■□□□□ 0.41
USP39-220ENST00000613444 G3BP1Q13283 466 aaKnown RBP eCLIP17.62■□□□□ 0.41
USP39-220ENST00000613444 OSBPL3Q9H4L5 887 aa17.62■□□□□ 0.41
USP39-220ENST00000613444 CHMP3Q9Y3E7 222 aa17.62■□□□□ 0.41
USP39-220ENST00000613444 OS9Q13438 667 aaPredicted RBP17.61■□□□□ 0.41
USP39-220ENST00000613444 BCL11AQ9H165 835 aa17.61■□□□□ 0.41
USP39-220ENST00000613444 HCLS1P14317 486 aaPredicted RBP17.6■□□□□ 0.41
USP39-220ENST00000613444 BMP2KLQ5H9B9 411 aa17.6■□□□□ 0.41
USP39-220ENST00000613444 NUTM1Q86Y26 1132 aa17.6■□□□□ 0.41
USP39-220ENST00000613444 CAMKK2Q96RR4 588 aa17.6■□□□□ 0.41
USP39-220ENST00000613444 GSPT1P15170 499 aaKnown RBP17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms