RNA–Protein interactions for RNA: ENST00000586417.5

ATG4D-204, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 2

Gene ATG4D, Length 1,752 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-204ENST00000586417 HMGB2P26583 209 aaKnown RBP25.39■■□□□ 1.66
ATG4D-204ENST00000586417 SSFA2P28290 1259 aa25.39■■□□□ 1.66
ATG4D-204ENST00000586417 SSH3Q8TE77 659 aa25.39■■□□□ 1.66
ATG4D-204ENST00000586417 BCORQ6W2J9 1755 aa25.39■■□□□ 1.66
ATG4D-204ENST00000586417 NEURL1BA8MQ27 555 aa25.39■■□□□ 1.65
ATG4D-204ENST00000586417 ATP5J2-PTCD1G3V325 749 aa25.39■■□□□ 1.65
ATG4D-204ENST00000586417 SLC15A2Q16348 729 aa25.39■■□□□ 1.65
ATG4D-204ENST00000586417 GIGYF2Q6Y7W6 1299 aaKnown RBP25.39■■□□□ 1.65
ATG4D-204ENST00000586417 C9orf78Q9NZ63 289 aaPredicted RBP25.39■■□□□ 1.65
ATG4D-204ENST00000586417 ERVV-1B6SEH8 477 aa25.38■■□□□ 1.65
ATG4D-204ENST00000586417 GRM8O00222 908 aa25.38■■□□□ 1.65
ATG4D-204ENST00000586417 NEXNQ0ZGT2 675 aa25.38■■□□□ 1.65
ATG4D-204ENST00000586417 POLA2Q14181 598 aa25.38■■□□□ 1.65
ATG4D-204ENST00000586417 USPL1Q5W0Q7 1092 aa25.38■■□□□ 1.65
ATG4D-204ENST00000586417 NARFQ9UHQ1 456 aa25.38■■□□□ 1.65
ATG4D-204ENST00000586417 ADRA2BP18089 450 aa25.37■■□□□ 1.65
ATG4D-204ENST00000586417 RFC4P35249 363 aa25.37■■□□□ 1.65
ATG4D-204ENST00000586417 PPP1R42Q7Z4L9 355 aa25.37■■□□□ 1.65
ATG4D-204ENST00000586417 BCL2L12Q9HB09 334 aa25.37■■□□□ 1.65
ATG4D-204ENST00000586417 SCN7AQ01118 1682 aa25.36■■□□□ 1.65
ATG4D-204ENST00000586417 AFDNP55196 1824 aaKnown RBP25.36■■□□□ 1.65
ATG4D-204ENST00000586417 TCIRG1Q13488 830 aa25.36■■□□□ 1.65
ATG4D-204ENST00000586417 MTX1Q13505 466 aa25.36■■□□□ 1.65
ATG4D-204ENST00000586417 COL23A1Q86Y22 540 aaPredicted RBP25.36■■□□□ 1.65
ATG4D-204ENST00000586417 STK32BQ9NY57 414 aa25.36■■□□□ 1.65
ATG4D-204ENST00000586417 PNPLA7Q6ZV29 1317 aa25.35■■□□□ 1.65
ATG4D-204ENST00000586417 USP42Q9H9J4 1324 aaKnown RBP25.35■■□□□ 1.65
ATG4D-204ENST00000586417 ZPR1O75312 459 aa25.35■■□□□ 1.65
ATG4D-204ENST00000586417 GCKRQ14397 625 aa25.35■■□□□ 1.65
ATG4D-204ENST00000586417 EXOC6BQ9Y2D4 811 aa25.35■■□□□ 1.65
ATG4D-204ENST00000586417 ANKRD36CQ5JPF3 1778 aa25.34■■□□□ 1.65
ATG4D-204ENST00000586417 SMARCA5O60264 1052 aaPredicted RBP25.34■■□□□ 1.65
ATG4D-204ENST00000586417 GPTP24298 496 aa25.33■■□□□ 1.65
ATG4D-204ENST00000586417 KAZALD1Q96I82 304 aa25.33■■□□□ 1.65
ATG4D-204ENST00000586417 APBB1O00213 710 aa25.33■■□□□ 1.65
ATG4D-204ENST00000586417 PLEKHM2Q8IWE5 1019 aa25.33■■□□□ 1.65
ATG4D-204ENST00000586417 SUCLG2Q96I99 432 aa25.33■■□□□ 1.65
ATG4D-204ENST00000586417 ISCA1Q9BUE6 129 aa25.33■■□□□ 1.65
ATG4D-204ENST00000586417 HDAC5Q9UQL6 1122 aa25.33■■□□□ 1.65
ATG4D-204ENST00000586417 SRGAP3O43295 1099 aa25.32■■□□□ 1.64
ATG4D-204ENST00000586417 C16orf71Q8IYS4 520 aaPredicted RBP25.32■■□□□ 1.64
ATG4D-204ENST00000586417 MSH5O43196 834 aa25.31■■□□□ 1.64
ATG4D-204ENST00000586417 BMP2KLQ5H9B9 411 aa25.31■■□□□ 1.64
ATG4D-204ENST00000586417 ZBTB47Q9UFB7 747 aaPredicted RBP25.31■■□□□ 1.64
ATG4D-204ENST00000586417 ZNF34Q8IZ26 560 aa25.31■■□□□ 1.64
ATG4D-204ENST00000586417 UBN2Q6ZU65 1347 aa25.31■■□□□ 1.64
ATG4D-204ENST00000586417 CLEC4GQ6UXB4 293 aa25.3■■□□□ 1.64
ATG4D-204ENST00000586417 OTUD7AQ8TE49 926 aaPredicted RBP25.3■■□□□ 1.64
ATG4D-204ENST00000586417 PDGFDQ9GZP0 370 aaPredicted RBP25.3■■□□□ 1.64
ATG4D-204ENST00000586417 QSER1Q2KHR3 1735 aa25.3■■□□□ 1.64
ATG4D-204ENST00000586417 SEC24BO95487 1268 aa25.29■■□□□ 1.64
ATG4D-204ENST00000586417 GYS1P13807 737 aa25.29■■□□□ 1.64
ATG4D-204ENST00000586417 TBC1D9BQ66K14 1250 aa25.29■■□□□ 1.64
ATG4D-204ENST00000586417 JARID2Q92833 1246 aaPredicted RBP25.29■■□□□ 1.64
ATG4D-204ENST00000586417 HSP90AB3PQ58FF7 597 aa25.28■■□□□ 1.64
ATG4D-204ENST00000586417 BICDL1Q6ZP65 573 aa25.28■■□□□ 1.64
ATG4D-204ENST00000586417 FLAD1Q8NFF5 587 aa25.28■■□□□ 1.64
ATG4D-204ENST00000586417 LRRCC1Q9C099 1032 aa25.28■■□□□ 1.64
ATG4D-204ENST00000586417 ZNF652Q9Y2D9 606 aa25.28■■□□□ 1.64
ATG4D-204ENST00000586417 NLRP10Q86W26 655 aa25.28■■□□□ 1.64
ATG4D-204ENST00000586417 BICC1Q9H694 974 aaKnown RBP25.28■■□□□ 1.64
ATG4D-204ENST00000586417 NIP7Q9Y221 180 aaKnown RBP eCLIP25.28■■□□□ 1.64
ATG4D-204ENST00000586417 TRIM28Q13263 835 aaKnown RBP25.27■■□□□ 1.64
ATG4D-204ENST00000586417 CCDC191Q8NCU4 936 aa25.27■■□□□ 1.64
ATG4D-204ENST00000586417 CWC25Q9NXE8 425 aaPredicted RBP25.27■■□□□ 1.64
ATG4D-204ENST00000586417 ANP32AP39687 249 aaKnown RBP25.26■■□□□ 1.63
ATG4D-204ENST00000586417 SALL3Q9BXA9 1300 aa25.26■■□□□ 1.63
ATG4D-204ENST00000586417 CASP7P55210 303 aa25.26■■□□□ 1.63
ATG4D-204ENST00000586417 RTL5Q5HYW3 569 aaPredicted RBP25.26■■□□□ 1.63
ATG4D-204ENST00000586417 FAM177BA6PVY3 158 aa25.25■■□□□ 1.63
ATG4D-204ENST00000586417 RGL2O15211 777 aa25.25■■□□□ 1.63
ATG4D-204ENST00000586417 RAB11FIP3O75154 756 aa25.25■■□□□ 1.63
ATG4D-204ENST00000586417 SURF6O75683 361 aaKnown RBP25.25■■□□□ 1.63
ATG4D-204ENST00000586417 NOP58Q9Y2X3 529 aaKnown RBP25.25■■□□□ 1.63
ATG4D-204ENST00000586417 GSPT1P15170 499 aaKnown RBP25.24■■□□□ 1.63
ATG4D-204ENST00000586417 SUSD4Q5VX71 490 aa25.24■■□□□ 1.63
ATG4D-204ENST00000586417 EPHA10Q5JZY3 1008 aa25.23■■□□□ 1.63
ATG4D-204ENST00000586417 SYNE4Q8N205 404 aa25.23■■□□□ 1.63
ATG4D-204ENST00000586417 NFIXQ14938 502 aa25.23■■□□□ 1.63
ATG4D-204ENST00000586417 TTC22Q5TAA0 569 aa25.23■■□□□ 1.63
ATG4D-204ENST00000586417 UBE3BQ7Z3V4 1068 aa25.23■■□□□ 1.63
ATG4D-204ENST00000586417 BCL11AQ9H165 835 aa25.23■■□□□ 1.63
ATG4D-204ENST00000586417 OSBPL3Q9H4L5 887 aa25.23■■□□□ 1.63
ATG4D-204ENST00000586417 H7C1W4 665 aa25.21■■□□□ 1.63
ATG4D-204ENST00000586417 MSL1Q68DK7 614 aa25.21■■□□□ 1.63
ATG4D-204ENST00000586417 FAM89AQ96GI7 184 aa25.21■■□□□ 1.63
ATG4D-204ENST00000586417 SETDB2Q96T68 719 aa25.21■■□□□ 1.63
ATG4D-204ENST00000586417 R3HDM1Q15032 1099 aaKnown RBP25.21■■□□□ 1.63
ATG4D-204ENST00000586417 RHPN1Q8TCX5 695 aa25.21■■□□□ 1.63
ATG4D-204ENST00000586417 RABL6Q3YEC7 729 aaPredicted RBP25.2■■□□□ 1.62
ATG4D-204ENST00000586417 HSP90AB4PQ58FF6 505 aa25.2■■□□□ 1.62
ATG4D-204ENST00000586417 TRMT112Q9UI30 125 aaKnown RBP25.2■■□□□ 1.62
ATG4D-204ENST00000586417 COL24A1Q17RW2 1714 aa25.2■■□□□ 1.62
ATG4D-204ENST00000586417 TM4SF1P30408 202 aa25.19■■□□□ 1.62
ATG4D-204ENST00000586417 PDE1AP54750 535 aa25.19■■□□□ 1.62
ATG4D-204ENST00000586417 PARP10Q53GL7 1025 aa25.19■■□□□ 1.62
ATG4D-204ENST00000586417 KIF1BPQ96EK5 621 aa25.19■■□□□ 1.62
ATG4D-204ENST00000586417 NTSR2O95665 410 aa25.18■■□□□ 1.62
ATG4D-204ENST00000586417 ZBTB38Q8NAP3 1195 aaPredicted RBP25.18■■□□□ 1.62
ATG4D-204ENST00000586417 PA2G4Q9UQ80 394 aaKnown RBP25.18■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms