RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 NBPF11Q86T75 865 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 SLC4A9Q96Q91 983 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 IGSF5Q9NSI5 407 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 ERBB4Q15303 1308 aa3.08□□□□□ -1.92
SMCHD1-211ENST00000584897 FGD5Q6ZNL6 1462 aa3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 FHAD1B1AJZ9 1412 aa3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 ELOA3CA0A087WX78 387 aaPredicted RBP3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 ELOA3DA6NLF2 546 aaPredicted RBP3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 ADD1P35611 737 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 PHKA2P46019 1235 aa3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 ELOA3BQ3SY89 546 aa3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 DTWD1Q8N5C7 304 aa3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 ELOA3Q8NG57 546 aa3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 DDX54Q8TDD1 881 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 CHMP7Q8WUX9 453 aaPredicted RBP3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 ZMYM4Q5VZL5 1548 aa3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 RAD54L2Q9Y4B4 1467 aa3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 RTN1Q16799 776 aa3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 BTBD6Q96KE9 485 aa3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 ZCCHC11Q5TAX3 1644 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 PRG4Q92954 1404 aaPredicted RBP3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 ACIN1Q9UKV3 1341 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 NOM1Q5C9Z4 860 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 TRAPPC3LQ5T215 181 aa3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 LYPD4Q6UWN0 246 aa3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 RGS22Q8NE09 1264 aa3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 SPACA7Q96KW9 195 aa3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 ZCCHC2Q9C0B9 1178 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 ZNF142P52746 1687 aaPredicted RBP3.07□□□□□ -1.92
SMCHD1-211ENST00000584897 LCE2AQ5TA79 106 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-211ENST00000584897 LCE2CQ5TA81 110 aa3.06□□□□□ -1.92
SMCHD1-211ENST00000584897 CLUAP1Q96AJ1 413 aa3.06□□□□□ -1.92
SMCHD1-211ENST00000584897 CDCA7Q9BWT1 371 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-211ENST00000584897 VRTNQ9H8Y1 702 aa3.06□□□□□ -1.92
SMCHD1-211ENST00000584897 CUX1P39880 1505 aa3.06□□□□□ -1.92
SMCHD1-211ENST00000584897 MTMR14Q8NCE2 650 aa3.06□□□□□ -1.92
SMCHD1-211ENST00000584897 SERTAD1Q9UHV2 236 aa3.06□□□□□ -1.92
SMCHD1-211ENST00000584897 ASXL2Q76L83 1435 aa3.06□□□□□ -1.92
SMCHD1-211ENST00000584897 ARHGEF12Q9NZN5 1544 aa3.06□□□□□ -1.92
SMCHD1-211ENST00000584897 ITGAEP38570 1179 aa3.06□□□□□ -1.92
SMCHD1-211ENST00000584897 IER5Q5VY09 327 aa3.06□□□□□ -1.92
SMCHD1-211ENST00000584897 CALR3Q96L12 384 aaKnown RBP3.06□□□□□ -1.92
SMCHD1-211ENST00000584897 BCL11AQ9H165 835 aa3.06□□□□□ -1.92
SMCHD1-211ENST00000584897 RUBCNLQ9H714 662 aa3.06□□□□□ -1.92
SMCHD1-211ENST00000584897 FOXO3O43524 673 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 LILRB5O75023 590 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 IRF5Q13568 498 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 DBN1Q16643 649 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 PMEPA1Q969W9 287 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 HINFPQ9BQA5 517 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 HMX1Q9NP08 348 aaPredicted RBP3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 ATP9BO43861 1147 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 GRIK1P39086 918 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 CABP4P57796 275 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 YIPF2Q9BWQ6 316 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 USP17L5A8MUK1 530 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 RGS9O75916 674 aaPredicted RBP3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 GHRHP01286 108 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 PSAPP07602 524 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 VAC14Q08AM6 782 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 MTFR1Q15390 333 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 ALKBH2Q6NS38 261 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 GDPD2Q9HCC8 539 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 CHIC2Q9UKJ5 165 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 TBC1D2BQ9UPU7 963 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 COG6Q9Y2V7 657 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 RICTORQ6R327 1708 aa3.05□□□□□ -1.92
SMCHD1-211ENST00000584897 ARID3CA6NKF2 412 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 IL2RAP01589 272 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 EPXP11678 715 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 NOS2P35228 1153 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 ABTB2Q8N961 1025 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 TRAIPQ9BWF2 469 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 UBE2OQ9C0C9 1292 aaKnown RBP3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 SNRKQ9NRH2 765 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 GGA1Q9UJY5 639 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 IGFBP4P22692 258 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 CCDC102BQ68D86 513 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 FHDC1Q9C0D6 1143 aaPredicted RBP3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 PRDM6Q9NQX0 595 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 ALKQ9UM73 1620 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 SCO2A0A1W2PP80 73 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 RFX1P22670 979 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 ZNF468Q5VIY5 522 aaPredicted RBP3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 AEBP1Q8IUX7 1158 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 FAM200AQ8TCP9 573 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 DCAF5Q96JK2 942 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 CEP41Q9BYV8 373 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 REREQ9P2R6 1566 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 CPS1P31327 1500 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 ADARB2-AS1A8MUL3 147 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 DKK1O94907 266 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 RASA1P20936 1047 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 TXKP42681 527 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 ARSDP51689 593 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 PHTF2Q8N3S3 785 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 PIK3R5Q8WYR1 880 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 ACDQ96AP0 544 aa3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 CCDC85AQ96PX6 553 aaPredicted RBP3.04□□□□□ -1.92
SMCHD1-211ENST00000584897 ZIC5Q96T25 663 aa3.04□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms