RNA–Protein interactions for RNA: ENST00000582308.1

RFFL-210, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 398 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-210ENST00000582308 MEIS3Q99687 375 aa12.04□□□□□ -0.48
RFFL-210ENST00000582308 CWC25Q9NXE8 425 aaPredicted RBP12.04□□□□□ -0.48
RFFL-210ENST00000582308 MYH3P11055 1940 aa12.03□□□□□ -0.48
RFFL-210ENST00000582308 SOCS7O14512 581 aa12.03□□□□□ -0.48
RFFL-210ENST00000582308 SUSD4Q5VX71 490 aa12.03□□□□□ -0.48
RFFL-210ENST00000582308 MSL1Q68DK7 614 aa12.03□□□□□ -0.48
RFFL-210ENST00000582308 NLGN1Q8N2Q7 840 aa12.03□□□□□ -0.48
RFFL-210ENST00000582308 JARID2Q92833 1246 aaPredicted RBP12.03□□□□□ -0.48
RFFL-210ENST00000582308 SETDB2Q96T68 719 aa12.03□□□□□ -0.48
RFFL-210ENST00000582308 DDX19BQ9UMR2 479 aa12.03□□□□□ -0.48
RFFL-210ENST00000582308 PSDA5PKW4 1024 aaPredicted RBP12.02□□□□□ -0.49
RFFL-210ENST00000582308 H7C1W4 665 aa12.02□□□□□ -0.49
RFFL-210ENST00000582308 GRM8O00222 908 aa12.02□□□□□ -0.49
RFFL-210ENST00000582308 NBPF7P0C2Y1 421 aaPredicted RBP12.02□□□□□ -0.49
RFFL-210ENST00000582308 CASP7P55210 303 aa12.02□□□□□ -0.49
RFFL-210ENST00000582308 DDR1Q08345 913 aa12.02□□□□□ -0.49
RFFL-210ENST00000582308 PARP10Q53GL7 1025 aa12.02□□□□□ -0.49
RFFL-210ENST00000582308 SYNE4Q8N205 404 aa12.02□□□□□ -0.49
RFFL-210ENST00000582308 SLC16A10Q8TF71 515 aa12.02□□□□□ -0.49
RFFL-210ENST00000582308 ZBTB40Q9NUA8 1239 aa12.02□□□□□ -0.49
RFFL-210ENST00000582308 C9orf78Q9NZ63 289 aaPredicted RBP12.02□□□□□ -0.49
RFFL-210ENST00000582308 UTYO14607 1347 aa12.02□□□□□ -0.49
RFFL-210ENST00000582308 DDX60Q8IY21 1712 aaKnown RBP12.02□□□□□ -0.49
RFFL-210ENST00000582308 NRXN2Q9P2S2 1712 aa12.01□□□□□ -0.49
RFFL-210ENST00000582308 FAM177BA6PVY3 158 aa12.01□□□□□ -0.49
RFFL-210ENST00000582308 NTSR2O95665 410 aa12.01□□□□□ -0.49
RFFL-210ENST00000582308 PCCAP05165 728 aaPredicted RBP12.01□□□□□ -0.49
RFFL-210ENST00000582308 NEFLP07196 543 aa12.01□□□□□ -0.49
RFFL-210ENST00000582308 RTL5Q5HYW3 569 aaPredicted RBP12.01□□□□□ -0.49
RFFL-210ENST00000582308 UBE3BQ7Z3V4 1068 aa12.01□□□□□ -0.49
RFFL-210ENST00000582308 ZBTB38Q8NAP3 1195 aaPredicted RBP12.01□□□□□ -0.49
RFFL-210ENST00000582308 FAM89AQ96GI7 184 aa12.01□□□□□ -0.49
RFFL-210ENST00000582308 UTP14AQ9BVJ6 771 aaKnown RBP12.01□□□□□ -0.49
RFFL-210ENST00000582308 TRMT112Q9UI30 125 aaKnown RBP12.01□□□□□ -0.49
RFFL-210ENST00000582308 CARMIL3Q8ND23 1372 aa12.01□□□□□ -0.49
RFFL-210ENST00000582308 LAMB2P55268 1798 aa12□□□□□ -0.49
RFFL-210ENST00000582308 POLRMTO00411 1230 aaKnown RBP12□□□□□ -0.49
RFFL-210ENST00000582308 GNAI3P08754 354 aa12□□□□□ -0.49
RFFL-210ENST00000582308 MMP10P09238 476 aa12□□□□□ -0.49
RFFL-210ENST00000582308 PPP1R42Q7Z4L9 355 aa12□□□□□ -0.49
RFFL-210ENST00000582308 ZBTB7AO95365 584 aa11.99□□□□□ -0.49
RFFL-210ENST00000582308 SERPINB2P05120 415 aa11.99□□□□□ -0.49
RFFL-210ENST00000582308 UBTFL1P0CB47 393 aaPredicted RBP11.99□□□□□ -0.49
RFFL-210ENST00000582308 NBPF5PQ86XG9 351 aaPredicted RBP11.99□□□□□ -0.49
RFFL-210ENST00000582308 NUTM1Q86Y26 1132 aa11.99□□□□□ -0.49
RFFL-210ENST00000582308 KAZALD1Q96I82 304 aa11.99□□□□□ -0.49
RFFL-210ENST00000582308 SUCLG2Q96I99 432 aa11.99□□□□□ -0.49
RFFL-210ENST00000582308 C1orf115Q9H7X2 142 aa11.99□□□□□ -0.49
RFFL-210ENST00000582308 ANKRD31Q8N7Z5 1873 aa11.99□□□□□ -0.49
RFFL-210ENST00000582308 SH3TC1Q8TE82 1336 aa11.98□□□□□ -0.49
RFFL-210ENST00000582308 GNAI2P04899 355 aa11.98□□□□□ -0.49
RFFL-210ENST00000582308 ERFEQ4G0M1 354 aa11.98□□□□□ -0.49
RFFL-210ENST00000582308 EPHA10Q5JZY3 1008 aa11.98□□□□□ -0.49
RFFL-210ENST00000582308 NYXQ9GZU5 481 aa11.98□□□□□ -0.49
RFFL-210ENST00000582308 CHMP4BQ9H444 224 aaKnown RBP11.98□□□□□ -0.49
RFFL-210ENST00000582308 ATF5Q9Y2D1 282 aaPredicted RBP11.98□□□□□ -0.49
RFFL-210ENST00000582308 LRRFIP2Q9Y608 721 aaKnown RBP11.98□□□□□ -0.49
RFFL-210ENST00000582308 ABCC12Q96J65 1359 aa11.97□□□□□ -0.49
RFFL-210ENST00000582308 CDHR2Q9BYE9 1310 aa11.97□□□□□ -0.49
RFFL-210ENST00000582308 IRS4O14654 1257 aaPredicted RBP11.97□□□□□ -0.49
RFFL-210ENST00000582308 HCLS1P14317 486 aaPredicted RBP11.97□□□□□ -0.49
RFFL-210ENST00000582308 FOXO4P98177 505 aa11.97□□□□□ -0.49
RFFL-210ENST00000582308 SLC10A5Q5PT55 438 aa11.97□□□□□ -0.49
RFFL-210ENST00000582308 PRR5LQ6MZQ0 368 aa11.97□□□□□ -0.49
RFFL-210ENST00000582308 TPTE2Q6XPS3 522 aa11.97□□□□□ -0.49
RFFL-210ENST00000582308 CCDC24Q8N4L8 307 aa11.97□□□□□ -0.49
RFFL-210ENST00000582308 CNBD1Q8NA66 436 aa11.97□□□□□ -0.49
RFFL-210ENST00000582308 MTFR1LQ9H019 292 aa11.97□□□□□ -0.49
RFFL-210ENST00000582308 PARP3Q9Y6F1 533 aa11.97□□□□□ -0.49
RFFL-210ENST00000582308 TAF1P21675 1872 aa11.97□□□□□ -0.49
RFFL-210ENST00000582308 TNRC6CQ9HCJ0 1690 aaKnown RBP11.97□□□□□ -0.49
RFFL-210ENST00000582308 AAMPQ13685 434 aa11.96□□□□□ -0.49
RFFL-210ENST00000582308 ANKRD44Q8N8A2 993 aa11.96□□□□□ -0.49
RFFL-210ENST00000582308 PLA2G12BQ9BX93 195 aa11.96□□□□□ -0.49
RFFL-210ENST00000582308 BICC1Q9H694 974 aaKnown RBP11.96□□□□□ -0.49
RFFL-210ENST00000582308 PCDHB15Q9Y5E8 787 aa11.96□□□□□ -0.49
RFFL-210ENST00000582308 PDE8AO60658 829 aa11.95□□□□□ -0.5
RFFL-210ENST00000582308 GTF2E1P29083 439 aaPredicted RBP11.95□□□□□ -0.5
RFFL-210ENST00000582308 C3orf67Q6ZVT6 689 aa11.95□□□□□ -0.5
RFFL-210ENST00000582308 SGIP1Q9BQI5 828 aa11.95□□□□□ -0.5
RFFL-210ENST00000582308 HDAC5Q9UQL6 1122 aa11.95□□□□□ -0.5
RFFL-210ENST00000582308 KIF13BQ9NQT8 1826 aa11.95□□□□□ -0.5
RFFL-210ENST00000582308 NPHP1O15259 732 aa11.94□□□□□ -0.5
RFFL-210ENST00000582308 PTGER2P43116 358 aa11.94□□□□□ -0.5
RFFL-210ENST00000582308 RABL6Q3YEC7 729 aaPredicted RBP11.94□□□□□ -0.5
RFFL-210ENST00000582308 ERICH6BQ5W0A0 696 aa11.94□□□□□ -0.5
RFFL-210ENST00000582308 CEP85Q6P2H3 762 aa11.94□□□□□ -0.5
RFFL-210ENST00000582308 LMBR1LQ6UX01 489 aa11.94□□□□□ -0.5
RFFL-210ENST00000582308 SIRT2Q8IXJ6 389 aa11.94□□□□□ -0.5
RFFL-210ENST00000582308 RIC1Q4ADV7 1423 aa11.94□□□□□ -0.5
RFFL-210ENST00000582308 PNMA6EA0A0J9YXQ4 647 aa11.93□□□□□ -0.5
RFFL-210ENST00000582308 CSF1RP07333 972 aa11.93□□□□□ -0.5
RFFL-210ENST00000582308 CTSWP56202 376 aa11.93□□□□□ -0.5
RFFL-210ENST00000582308 ST5P78524 1137 aa11.93□□□□□ -0.5
RFFL-210ENST00000582308 ATP8B2P98198 1209 aa11.93□□□□□ -0.5
RFFL-210ENST00000582308 MTX1Q13505 466 aa11.93□□□□□ -0.5
RFFL-210ENST00000582308 TTLL11Q8NHH1 800 aa11.93□□□□□ -0.5
RFFL-210ENST00000582308 SPEF2Q9C093 1822 aa11.93□□□□□ -0.5
RFFL-210ENST00000582308 HSP90B1P14625 803 aaKnown RBP11.92□□□□□ -0.5
RFFL-210ENST00000582308 NLRP3Q96P20 1036 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms