RNA–Protein interactions for RNA: ENST00000569128.1

CDH11-216, Transcript of cadherin 11, human

TSL 3

Gene CDH11, Length 781 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDH11-216	ENST00000569128	CXXC1	Q9P0U4	656 aa	Predicted RBP	11.49	□□□□□ -0.57
CDH11-216	ENST00000569128	PZP	P20742	1482 aa		11.49	□□□□□ -0.57
CDH11-216	ENST00000569128	CAPN5	O15484	640 aa	Predicted RBP	11.48	□□□□□ -0.57
CDH11-216	ENST00000569128	WEE1	P30291	646 aa		11.48	□□□□□ -0.57
CDH11-216	ENST00000569128	EPHA4	P54764	986 aa		11.48	□□□□□ -0.57
CDH11-216	ENST00000569128	CCDC27	Q2M243	656 aa		11.48	□□□□□ -0.57
CDH11-216	ENST00000569128	CCER1	Q8TC90	406 aa	Predicted RBP	11.48	□□□□□ -0.57
CDH11-216	ENST00000569128	ESYT1	Q9BSJ8	1104 aa		11.48	□□□□□ -0.57
CDH11-216	ENST00000569128	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.48	□□□□□ -0.57
CDH11-216	ENST00000569128	MROH1	Q8NDA8	1641 aa		11.48	□□□□□ -0.57
CDH11-216	ENST00000569128	EIF2AK4	Q9P2K8	1649 aa	Known RBP	11.47	□□□□□ -0.57
CDH11-216	ENST00000569128	UNC13B	O14795	1591 aa		11.47	□□□□□ -0.57
CDH11-216	ENST00000569128	RERE	Q9P2R6	1566 aa		11.47	□□□□□ -0.57
CDH11-216	ENST00000569128		A6NJY4	79 aa		11.47	□□□□□ -0.57
CDH11-216	ENST00000569128	SMTN	P53814	917 aa		11.47	□□□□□ -0.57
CDH11-216	ENST00000569128	TLR1	Q15399	786 aa		11.47	□□□□□ -0.57
CDH11-216	ENST00000569128	SCG3	Q8WXD2	468 aa	Known RBP	11.47	□□□□□ -0.57
CDH11-216	ENST00000569128	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	11.47	□□□□□ -0.57
CDH11-216	ENST00000569128	IVNS1ABP	Q9Y6Y0	642 aa		11.47	□□□□□ -0.57
CDH11-216	ENST00000569128	TBCEL	Q5QJ74	424 aa		11.46	□□□□□ -0.57
CDH11-216	ENST00000569128	NLRP3	Q96P20	1036 aa		11.46	□□□□□ -0.57
CDH11-216	ENST00000569128	PURB	Q96QR8	312 aa	Known RBP	11.46	□□□□□ -0.57
CDH11-216	ENST00000569128	DEPDC5	O75140	1603 aa		11.46	□□□□□ -0.58
CDH11-216	ENST00000569128	AGL	P35573	1532 aa		11.45	□□□□□ -0.58
CDH11-216	ENST00000569128	CENPC	Q03188	943 aa		11.45	□□□□□ -0.58
CDH11-216	ENST00000569128	SND1	Q7KZF4	910 aa	Known RBP eCLIP	11.45	□□□□□ -0.58
CDH11-216	ENST00000569128	SCHIP1	Q9P0W5	487 aa	Predicted RBP	11.45	□□□□□ -0.58
CDH11-216	ENST00000569128	HRH3	Q9Y5N1	445 aa		11.45	□□□□□ -0.58
CDH11-216	ENST00000569128	RNF17	Q9BXT8	1623 aa	Known RBP	11.45	□□□□□ -0.58
CDH11-216	ENST00000569128	KDM5D	Q9BY66	1539 aa		11.45	□□□□□ -0.58
CDH11-216	ENST00000569128	ATAD2	Q6PL18	1390 aa		11.44	□□□□□ -0.58
CDH11-216	ENST00000569128	BCORL1	Q5H9F3	1711 aa		11.44	□□□□□ -0.58
CDH11-216	ENST00000569128	FKBP5	Q13451	457 aa	Predicted RBP	11.44	□□□□□ -0.58
CDH11-216	ENST00000569128	MTFR1	Q15390	333 aa		11.44	□□□□□ -0.58
CDH11-216	ENST00000569128	SLC9A9	Q8IVB4	645 aa		11.44	□□□□□ -0.58
CDH11-216	ENST00000569128	C1orf216	Q8TAB5	229 aa		11.44	□□□□□ -0.58
CDH11-216	ENST00000569128	TSEN34	Q9BSV6	310 aa	Known RBP	11.44	□□□□□ -0.58
CDH11-216	ENST00000569128	MKNK1	Q9BUB5	465 aa		11.44	□□□□□ -0.58
CDH11-216	ENST00000569128	FAM135A	Q9P2D6	1515 aa		11.44	□□□□□ -0.58
CDH11-216	ENST00000569128	VWDE	Q8N2E2	1590 aa		11.43	□□□□□ -0.58
CDH11-216	ENST00000569128	C21orf2	O43822	256 aa		11.43	□□□□□ -0.58
CDH11-216	ENST00000569128	GFRA3	O60609	400 aa		11.43	□□□□□ -0.58
CDH11-216	ENST00000569128	IGFBP4	P22692	258 aa		11.43	□□□□□ -0.58
CDH11-216	ENST00000569128	ARID4A	P29374	1257 aa	Predicted RBP	11.43	□□□□□ -0.58
CDH11-216	ENST00000569128	FOXK2	Q01167	660 aa		11.43	□□□□□ -0.58
CDH11-216	ENST00000569128	TAS1R3	Q7RTX0	852 aa		11.43	□□□□□ -0.58
CDH11-216	ENST00000569128	TXNDC2	Q86VQ3	553 aa		11.43	□□□□□ -0.58
CDH11-216	ENST00000569128	INSM2	Q96T92	566 aa	Predicted RBP	11.43	□□□□□ -0.58
CDH11-216	ENST00000569128	USP3	Q9Y6I4	520 aa		11.43	□□□□□ -0.58
CDH11-216	ENST00000569128	PRDM15	P57071	1507 aa	Predicted RBP	11.43	□□□□□ -0.58
CDH11-216	ENST00000569128	KANK1	Q14678	1352 aa		11.42	□□□□□ -0.58
CDH11-216	ENST00000569128	IQGAP3	Q86VI3	1631 aa		11.42	□□□□□ -0.58
CDH11-216	ENST00000569128	WASHC2C	Q9Y4E1	1318 aa		11.42	□□□□□ -0.58
CDH11-216	ENST00000569128	LINC00528	Q8N1L1	170 aa		11.42	□□□□□ -0.58
CDH11-216	ENST00000569128	SIN3A	Q96ST3	1273 aa		11.42	□□□□□ -0.58
CDH11-216	ENST00000569128	FHDC1	Q9C0D6	1143 aa	Predicted RBP	11.42	□□□□□ -0.58
CDH11-216	ENST00000569128	GNE	Q9Y223	722 aa	Known RBP	11.42	□□□□□ -0.58
CDH11-216	ENST00000569128	CEP152	O94986	1710 aa		11.42	□□□□□ -0.58
CDH11-216	ENST00000569128	PPP1R12B	O60237	982 aa	Predicted RBP	11.41	□□□□□ -0.58
CDH11-216	ENST00000569128	UPP2	O95045	317 aa		11.41	□□□□□ -0.58
CDH11-216	ENST00000569128	ABCC3	O15438	1527 aa		11.4	□□□□□ -0.58
CDH11-216	ENST00000569128	CDK2AP1	O14519	115 aa		11.4	□□□□□ -0.58
CDH11-216	ENST00000569128	AVP	P01185	164 aa		11.4	□□□□□ -0.58
CDH11-216	ENST00000569128	C6orf118	Q5T5N4	469 aa		11.4	□□□□□ -0.58
CDH11-216	ENST00000569128	CAPN12	Q6ZSI9	719 aa		11.4	□□□□□ -0.58
CDH11-216	ENST00000569128	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	11.4	□□□□□ -0.58
CDH11-216	ENST00000569128	SPINT1	O43278	529 aa		11.39	□□□□□ -0.59
CDH11-216	ENST00000569128	FOXO3	O43524	673 aa		11.39	□□□□□ -0.59
CDH11-216	ENST00000569128	SERPINB4	P48594	390 aa		11.39	□□□□□ -0.59
CDH11-216	ENST00000569128	PKDCC	Q504Y2	493 aa		11.39	□□□□□ -0.59
CDH11-216	ENST00000569128	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	11.39	□□□□□ -0.59
CDH11-216	ENST00000569128	POLM	Q9NP87	494 aa	Predicted RBP	11.39	□□□□□ -0.59
CDH11-216	ENST00000569128	SEPT3	Q9UH03	358 aa		11.39	□□□□□ -0.59
CDH11-216	ENST00000569128	NRG2	O14511	850 aa	Predicted RBP	11.38	□□□□□ -0.59
CDH11-216	ENST00000569128	BMP2	P12643	396 aa		11.38	□□□□□ -0.59
CDH11-216	ENST00000569128	BMP1	P13497	986 aa		11.38	□□□□□ -0.59
CDH11-216	ENST00000569128	CTSO	P43234	321 aa	Predicted RBP	11.38	□□□□□ -0.59
CDH11-216	ENST00000569128	NEUROD1	Q13562	356 aa		11.38	□□□□□ -0.59
CDH11-216	ENST00000569128	MRPL14	Q6P1L8	145 aa	Known RBP	11.38	□□□□□ -0.59
CDH11-216	ENST00000569128	LMTK2	Q8IWU2	1503 aa		11.38	□□□□□ -0.59
CDH11-216	ENST00000569128	ANKRD30B	Q9BXX2	1392 aa		11.38	□□□□□ -0.59
CDH11-216	ENST00000569128		E9PCH4	1651 aa		11.37	□□□□□ -0.59
CDH11-216	ENST00000569128	TET3	O43151	1660 aa		11.37	□□□□□ -0.59
CDH11-216	ENST00000569128	CLTC	Q00610	1675 aa	Known RBP	11.37	□□□□□ -0.59
CDH11-216	ENST00000569128	DGAT1	O75907	488 aa		11.37	□□□□□ -0.59
CDH11-216	ENST00000569128	PSMA6	P60900	246 aa	Known RBP	11.37	□□□□□ -0.59
CDH11-216	ENST00000569128	SLC27A3	Q5K4L6	730 aa		11.37	□□□□□ -0.59
CDH11-216	ENST00000569128	TMEM214	Q6NUQ4	689 aa	Known RBP	11.37	□□□□□ -0.59
CDH11-216	ENST00000569128	VTI1A	Q96AJ9	217 aa		11.37	□□□□□ -0.59
CDH11-216	ENST00000569128	PLA2R1	Q13018	1463 aa		11.37	□□□□□ -0.59
CDH11-216	ENST00000569128	CFAP65	Q6ZU64	1925 aa	Known RBP	11.37	□□□□□ -0.59
CDH11-216	ENST00000569128	CEBPA	P49715	358 aa	Predicted RBP	11.36	□□□□□ -0.59
CDH11-216	ENST00000569128	NAA30	Q147X3	362 aa	Predicted RBP	11.36	□□□□□ -0.59
CDH11-216	ENST00000569128	NBPF15	Q8N660	670 aa		11.36	□□□□□ -0.59
CDH11-216	ENST00000569128	CABP1	Q9NZU7	370 aa		11.36	□□□□□ -0.59
CDH11-216	ENST00000569128	NPAT	Q14207	1427 aa		11.35	□□□□□ -0.59
CDH11-216	ENST00000569128	EFCAB6	Q5THR3	1501 aa		11.35	□□□□□ -0.59
CDH11-216	ENST00000569128	CAMSAP1	Q5T5Y3	1602 aa		11.35	□□□□□ -0.59
CDH11-216	ENST00000569128	ABL1	P00519	1130 aa		11.35	□□□□□ -0.59
CDH11-216	ENST00000569128	GTF2E1	P29083	439 aa	Predicted RBP	11.35	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms