RNA–Protein interactions for RNA: ENST00000568239.1

SMG1-215, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 1 (best)

Gene SMG1, Length 2,978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-215ENST00000568239 FAM89AQ96GI7 184 aa8.67□□□□□ -1.02
SMG1-215ENST00000568239 GJD4Q96KN9 370 aaPredicted RBP8.67□□□□□ -1.02
SMG1-215ENST00000568239 CCDC85AQ96PX6 553 aaPredicted RBP8.67□□□□□ -1.02
SMG1-215ENST00000568239 OSBPL3Q9H4L5 887 aa8.67□□□□□ -1.02
SMG1-215ENST00000568239 MAP3K15Q6ZN16 1313 aa8.67□□□□□ -1.02
SMG1-215ENST00000568239 H7C1W4 665 aa8.67□□□□□ -1.02
SMG1-215ENST00000568239 CRKLP46109 303 aaKnown RBP8.67□□□□□ -1.02
SMG1-215ENST00000568239 PTF1AQ7RTS3 328 aa8.67□□□□□ -1.02
SMG1-215ENST00000568239 FAM177BA6PVY3 158 aa8.66□□□□□ -1.02
SMG1-215ENST00000568239 ITPK1Q13572 414 aa8.66□□□□□ -1.02
SMG1-215ENST00000568239 GIGYF2Q6Y7W6 1299 aaKnown RBP8.66□□□□□ -1.02
SMG1-215ENST00000568239 SMARCC1Q92922 1105 aaPredicted RBP8.66□□□□□ -1.02
SMG1-215ENST00000568239 IL6STP40189 918 aaPredicted RBP8.66□□□□□ -1.02
SMG1-215ENST00000568239 CASP7P55210 303 aa8.66□□□□□ -1.02
SMG1-215ENST00000568239 ISCA1Q9BUE6 129 aa8.66□□□□□ -1.02
SMG1-215ENST00000568239 CCDC8Q9H0W5 538 aaPredicted RBP8.66□□□□□ -1.02
SMG1-215ENST00000568239 CCDC87Q9NVE4 849 aa8.66□□□□□ -1.02
SMG1-215ENST00000568239 SASH1O94885 1247 aa8.65□□□□□ -1.02
SMG1-215ENST00000568239 SALL3Q9BXA9 1300 aa8.65□□□□□ -1.02
SMG1-215ENST00000568239 FOXO4P98177 505 aa8.65□□□□□ -1.02
SMG1-215ENST00000568239 PTPN12Q05209 780 aaKnown RBP8.65□□□□□ -1.02
SMG1-215ENST00000568239 INTS5Q6P9B9 1019 aaKnown RBP8.65□□□□□ -1.02
SMG1-215ENST00000568239 STAP2Q9UGK3 403 aa8.65□□□□□ -1.02
SMG1-215ENST00000568239 TRPC5Q9UL62 973 aaPredicted RBP8.65□□□□□ -1.02
SMG1-215ENST00000568239 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.65□□□□□ -1.02
SMG1-215ENST00000568239 NUP188Q5SRE5 1749 aa8.65□□□□□ -1.03
SMG1-215ENST00000568239 EP400Q96L91 3159 aa8.65□□□□□ -1.03
SMG1-215ENST00000568239 RABL6Q3YEC7 729 aaPredicted RBP8.64□□□□□ -1.03
SMG1-215ENST00000568239 HSP90AB3PQ58FF7 597 aa8.64□□□□□ -1.03
SMG1-215ENST00000568239 SYNE4Q8N205 404 aa8.64□□□□□ -1.03
SMG1-215ENST00000568239 GPATCH3Q96I76 525 aa8.64□□□□□ -1.03
SMG1-215ENST00000568239 QTRT2Q9H974 415 aaKnown RBP8.64□□□□□ -1.03
SMG1-215ENST00000568239 BECN1Q14457 450 aa8.64□□□□□ -1.03
SMG1-215ENST00000568239 SEPT12Q8IYM1 358 aa8.64□□□□□ -1.03
SMG1-215ENST00000568239 EAF2Q96CJ1 260 aaPredicted RBP8.64□□□□□ -1.03
SMG1-215ENST00000568239 ZNF594Q96JF6 807 aaPredicted RBP8.64□□□□□ -1.03
SMG1-215ENST00000568239 COPRSQ9NQ92 184 aa8.64□□□□□ -1.03
SMG1-215ENST00000568239 TRMT112Q9UI30 125 aaKnown RBP8.64□□□□□ -1.03
SMG1-215ENST00000568239 ERC2O15083 957 aa8.64□□□□□ -1.03
SMG1-215ENST00000568239 RFX5P48382 616 aaPredicted RBP8.64□□□□□ -1.03
SMG1-215ENST00000568239 EIF5P55010 431 aaKnown RBP8.64□□□□□ -1.03
SMG1-215ENST00000568239 CCDC57Q2TAC2 916 aa8.64□□□□□ -1.03
SMG1-215ENST00000568239 NLRP10Q86W26 655 aa8.64□□□□□ -1.03
SMG1-215ENST00000568239 ZBTB38Q8NAP3 1195 aaPredicted RBP8.64□□□□□ -1.03
SMG1-215ENST00000568239 ECHDC1Q9NTX5 307 aa8.64□□□□□ -1.03
SMG1-215ENST00000568239 TFCP2Q12800 502 aa8.63□□□□□ -1.03
SMG1-215ENST00000568239 TAF7LQ5H9L4 462 aa8.63□□□□□ -1.03
SMG1-215ENST00000568239 PI4K2BQ8TCG2 481 aa8.63□□□□□ -1.03
SMG1-215ENST00000568239 TLR7Q9NYK1 1049 aaKnown RBP8.63□□□□□ -1.03
SMG1-215ENST00000568239 TJP1Q07157 1748 aa8.63□□□□□ -1.03
SMG1-215ENST00000568239 TNKS1BP1Q9C0C2 1729 aaKnown RBP8.63□□□□□ -1.03
SMG1-215ENST00000568239 GLRX3O76003 335 aaKnown RBP8.63□□□□□ -1.03
SMG1-215ENST00000568239 PCCAP05165 728 aaPredicted RBP8.63□□□□□ -1.03
SMG1-215ENST00000568239 TRIM28Q13263 835 aaKnown RBP8.63□□□□□ -1.03
SMG1-215ENST00000568239 SMIM5Q71RC9 77 aa8.63□□□□□ -1.03
SMG1-215ENST00000568239 CNTROBQ8N137 903 aa8.63□□□□□ -1.03
SMG1-215ENST00000568239 NEUROD6Q96NK8 337 aa8.62□□□□□ -1.03
SMG1-215ENST00000568239 MYH14Q7Z406 1995 aaKnown RBP8.62□□□□□ -1.03
SMG1-215ENST00000568239 AOX1Q06278 1338 aa8.62□□□□□ -1.03
SMG1-215ENST00000568239 TTC41PQ6P2S7 1318 aa8.62□□□□□ -1.03
SMG1-215ENST00000568239 ERVV-1B6SEH8 477 aa8.62□□□□□ -1.03
SMG1-215ENST00000568239 TULP1O00294 542 aaPredicted RBP8.62□□□□□ -1.03
SMG1-215ENST00000568239 EIF5BO60841 1220 aaKnown RBP8.62□□□□□ -1.03
SMG1-215ENST00000568239 REC8O95072 547 aa8.62□□□□□ -1.03
SMG1-215ENST00000568239 SPRYD3Q8NCJ5 442 aa8.62□□□□□ -1.03
SMG1-215ENST00000568239 LINC00116Q8NCU8 138 aa8.62□□□□□ -1.03
SMG1-215ENST00000568239 BOLA2Q9H3K6 86 aa8.62□□□□□ -1.03
SMG1-215ENST00000568239 IRS4O14654 1257 aaPredicted RBP8.61□□□□□ -1.03
SMG1-215ENST00000568239 RBM25P49756 843 aaKnown RBP8.61□□□□□ -1.03
SMG1-215ENST00000568239 LRRC24Q50LG9 513 aa8.61□□□□□ -1.03
SMG1-215ENST00000568239 CCNL1Q9UK58 526 aaPredicted RBP8.61□□□□□ -1.03
SMG1-215ENST00000568239 COL15A1P39059 1388 aa8.61□□□□□ -1.03
SMG1-215ENST00000568239 NUP98P52948 1817 aa8.61□□□□□ -1.03
SMG1-215ENST00000568239 CHMLP26374 656 aa8.61□□□□□ -1.03
SMG1-215ENST00000568239 IFIT5Q13325 482 aaKnown RBP8.61□□□□□ -1.03
SMG1-215ENST00000568239 TNNI3KQ59H18 835 aa8.61□□□□□ -1.03
SMG1-215ENST00000568239 ANO2Q9NQ90 1003 aa8.61□□□□□ -1.03
SMG1-215ENST00000568239 NIP7Q9Y221 180 aaKnown RBP eCLIP8.61□□□□□ -1.03
SMG1-215ENST00000568239 FPGT-TNNI3KV9GXZ4 949 aa8.61□□□□□ -1.03
SMG1-215ENST00000568239 UBN2Q6ZU65 1347 aa8.61□□□□□ -1.03
SMG1-215ENST00000568239 BICDL1Q6ZP65 573 aa8.61□□□□□ -1.03
SMG1-215ENST00000568239 TBC1D2Q9BYX2 928 aa8.61□□□□□ -1.03
SMG1-215ENST00000568239 PUS3Q9BZE2 481 aaKnown RBP8.61□□□□□ -1.03
SMG1-215ENST00000568239 AK9Q5TCS8 1911 aa8.6□□□□□ -1.03
SMG1-215ENST00000568239 EYA2O00167 538 aa8.6□□□□□ -1.03
SMG1-215ENST00000568239 CAMTA2O94983 1202 aa8.6□□□□□ -1.03
SMG1-215ENST00000568239 SUSD4Q5VX71 490 aa8.6□□□□□ -1.03
SMG1-215ENST00000568239 CWC27Q6UX04 472 aaKnown RBP8.6□□□□□ -1.03
SMG1-215ENST00000568239 ESYT1Q9BSJ8 1104 aa8.6□□□□□ -1.03
SMG1-215ENST00000568239 USP26Q9BXU7 913 aa8.6□□□□□ -1.03
SMG1-215ENST00000568239 SLKQ9H2G2 1235 aaPredicted RBP8.6□□□□□ -1.03
SMG1-215ENST00000568239 GNPATO15228 680 aa8.6□□□□□ -1.03
SMG1-215ENST00000568239 HCLS1P14317 486 aaPredicted RBP8.6□□□□□ -1.03
SMG1-215ENST00000568239 IL15P40933 162 aaPredicted RBP8.6□□□□□ -1.03
SMG1-215ENST00000568239 TIMM10P62072 90 aa8.6□□□□□ -1.03
SMG1-215ENST00000568239 NBR1Q14596 966 aa8.6□□□□□ -1.03
SMG1-215ENST00000568239 HSCBQ8IWL3 235 aa8.6□□□□□ -1.03
SMG1-215ENST00000568239 ZNF34Q8IZ26 560 aa8.6□□□□□ -1.03
SMG1-215ENST00000568239 DBNDD2Q9BQY9 259 aa8.6□□□□□ -1.03
SMG1-215ENST00000568239 GREM2Q9H772 168 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms