RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ITGB4P16144 1822 aa9.15□□□□□ -0.95
VPS39-204ENST00000561818 AFDNP55196 1824 aaKnown RBP9.15□□□□□ -0.95
VPS39-204ENST00000561818 PTCD1O75127 700 aaKnown RBP9.14□□□□□ -0.95
VPS39-204ENST00000561818 ADAMTS2O95450 1211 aa9.14□□□□□ -0.95
VPS39-204ENST00000561818 CWF19L2Q2TBE0 894 aaKnown RBP9.14□□□□□ -0.95
VPS39-204ENST00000561818 ZBTB38Q8NAP3 1195 aaPredicted RBP9.14□□□□□ -0.95
VPS39-204ENST00000561818 SUCLG2Q96I99 432 aa9.14□□□□□ -0.95
VPS39-204ENST00000561818 NGLY1Q96IV0 654 aa9.14□□□□□ -0.95
VPS39-204ENST00000561818 ISCA1Q9BUE6 129 aa9.14□□□□□ -0.95
VPS39-204ENST00000561818 CCDC9Q9Y3X0 531 aaKnown RBP9.14□□□□□ -0.95
VPS39-204ENST00000561818 DOT1LQ8TEK3 1739 aa9.14□□□□□ -0.95
VPS39-204ENST00000561818 TRIM6-TRIM34B2RNG4 842 aa9.13□□□□□ -0.95
VPS39-204ENST00000561818 ANXA1P04083 346 aa9.13□□□□□ -0.95
VPS39-204ENST00000561818 CYP19A1P11511 503 aaPredicted RBP9.13□□□□□ -0.95
VPS39-204ENST00000561818 PIP4K2BP78356 416 aa9.13□□□□□ -0.95
VPS39-204ENST00000561818 CCDC57Q2TAC2 916 aa9.13□□□□□ -0.95
VPS39-204ENST00000561818 CLEC4GQ6UXB4 293 aa9.13□□□□□ -0.95
VPS39-204ENST00000561818 UBE3BQ7Z3V4 1068 aa9.13□□□□□ -0.95
VPS39-204ENST00000561818 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.13□□□□□ -0.95
VPS39-204ENST00000561818 CHMP4CQ96CF2 233 aa9.13□□□□□ -0.95
VPS39-204ENST00000561818 IL17RAQ96F46 866 aa9.13□□□□□ -0.95
VPS39-204ENST00000561818 RBM42Q9BTD8 480 aaKnown RBP9.13□□□□□ -0.95
VPS39-204ENST00000561818 DIAPH3Q9NSV4 1193 aa9.13□□□□□ -0.95
VPS39-204ENST00000561818 PRAMEF22A3QJZ6 481 aa9.12□□□□□ -0.95
VPS39-204ENST00000561818 NBPF26B4DH59 902 aa9.12□□□□□ -0.95
VPS39-204ENST00000561818 APBB1O00213 710 aa9.12□□□□□ -0.95
VPS39-204ENST00000561818 IGSF3O75054 1194 aa9.12□□□□□ -0.95
VPS39-204ENST00000561818 HSP90AA1P07900 732 aaKnown RBP9.12□□□□□ -0.95
VPS39-204ENST00000561818 NBPF14Q5TI25 921 aa9.12□□□□□ -0.95
VPS39-204ENST00000561818 RNF20Q5VTR2 975 aa9.12□□□□□ -0.95
VPS39-204ENST00000561818 NBPF10Q6P3W6 841 aaKnown RBP9.12□□□□□ -0.95
VPS39-204ENST00000561818 SKAP1Q86WV1 359 aa9.12□□□□□ -0.95
VPS39-204ENST00000561818 NBPF15Q8N660 670 aa9.12□□□□□ -0.95
VPS39-204ENST00000561818 CERKQ8TCT0 537 aa9.12□□□□□ -0.95
VPS39-204ENST00000561818 ESYT1Q9BSJ8 1104 aa9.12□□□□□ -0.95
VPS39-204ENST00000561818 CCDC87Q9NVE4 849 aa9.12□□□□□ -0.95
VPS39-204ENST00000561818 RREB1Q92766 1687 aa9.12□□□□□ -0.95
VPS39-204ENST00000561818 SPEF2Q9C093 1822 aa9.12□□□□□ -0.95
VPS39-204ENST00000561818 CNTNAP4Q9C0A0 1308 aa9.11□□□□□ -0.95
VPS39-204ENST00000561818 LOC102724428A0A0B4J2F2 783 aa9.11□□□□□ -0.95
VPS39-204ENST00000561818 SIK1P57059 783 aa9.11□□□□□ -0.95
VPS39-204ENST00000561818 TAF7LQ5H9L4 462 aa9.11□□□□□ -0.95
VPS39-204ENST00000561818 MEX3CQ5U5Q3 659 aaKnown RBP9.11□□□□□ -0.95
VPS39-204ENST00000561818 TMED8Q6PL24 325 aaPredicted RBP9.11□□□□□ -0.95
VPS39-204ENST00000561818 AACSQ86V21 672 aa9.11□□□□□ -0.95
VPS39-204ENST00000561818 RILPL2Q969X0 211 aa9.11□□□□□ -0.95
VPS39-204ENST00000561818 SYTL4Q96C24 671 aaPredicted RBP9.11□□□□□ -0.95
VPS39-204ENST00000561818 CWC22Q9HCG8 908 aaKnown RBP9.11□□□□□ -0.95
VPS39-204ENST00000561818 TRPC5Q9UL62 973 aaPredicted RBP9.11□□□□□ -0.95
VPS39-204ENST00000561818 ASAP1Q9ULH1 1129 aa9.11□□□□□ -0.95
VPS39-204ENST00000561818 KAT6BQ8WYB5 2073 aa9.11□□□□□ -0.95
VPS39-204ENST00000561818 RTL9Q8NET4 1388 aa9.11□□□□□ -0.95
VPS39-204ENST00000561818 PALLDQ8WX93 1383 aa9.11□□□□□ -0.95
VPS39-204ENST00000561818 ANKRD36CQ5JPF3 1778 aa9.1□□□□□ -0.95
VPS39-204ENST00000561818 NUTM2BA6NNL0 878 aaPredicted RBP9.1□□□□□ -0.95
VPS39-204ENST00000561818 NUTM2EB1AL46 878 aaPredicted RBP9.1□□□□□ -0.95
VPS39-204ENST00000561818 K7ELQ4 463 aaPredicted RBP9.1□□□□□ -0.95
VPS39-204ENST00000561818 SMARCA5O60264 1052 aaPredicted RBP9.1□□□□□ -0.95
VPS39-204ENST00000561818 A1BGP04217 495 aa9.1□□□□□ -0.95
VPS39-204ENST00000561818 ZKSCAN1P17029 563 aaPredicted RBP9.1□□□□□ -0.95
VPS39-204ENST00000561818 ATP5JP18859 108 aa9.1□□□□□ -0.95
VPS39-204ENST00000561818 CHMLP26374 656 aa9.1□□□□□ -0.95
VPS39-204ENST00000561818 PRIM1P49642 420 aaKnown RBP9.1□□□□□ -0.95
VPS39-204ENST00000561818 CASP7P55210 303 aa9.1□□□□□ -0.95
VPS39-204ENST00000561818 IFIT5Q13325 482 aaKnown RBP9.1□□□□□ -0.95
VPS39-204ENST00000561818 RC3H1Q5TC82 1133 aaKnown RBP9.1□□□□□ -0.95
VPS39-204ENST00000561818 DZIP3Q86Y13 1208 aaKnown RBP9.1□□□□□ -0.95
VPS39-204ENST00000561818 NUTM2AQ8IVF1 878 aaPredicted RBP9.1□□□□□ -0.95
VPS39-204ENST00000561818 DNAJC10Q8IXB1 793 aa9.1□□□□□ -0.95
VPS39-204ENST00000561818 PI4K2BQ8TCG2 481 aa9.1□□□□□ -0.95
VPS39-204ENST00000561818 USP26Q9BXU7 913 aa9.1□□□□□ -0.95
VPS39-204ENST00000561818 CHMP5Q9NZZ3 219 aa9.1□□□□□ -0.95
VPS39-204ENST00000561818 HMG20BQ9P0W2 317 aa9.1□□□□□ -0.95
VPS39-204ENST00000561818 USP21Q9UK80 565 aa9.1□□□□□ -0.95
VPS39-204ENST00000561818 THSD7AQ9UPZ6 1657 aa9.1□□□□□ -0.95
VPS39-204ENST00000561818 TUBGCP6Q96RT7 1819 aa9.1□□□□□ -0.95
VPS39-204ENST00000561818 BCL9LQ86UU0 1499 aa9.09□□□□□ -0.95
VPS39-204ENST00000561818 EYA2O00167 538 aa9.09□□□□□ -0.95
VPS39-204ENST00000561818 PDE8AO60658 829 aa9.09□□□□□ -0.95
VPS39-204ENST00000561818 SEC24BO95487 1268 aa9.09□□□□□ -0.95
VPS39-204ENST00000561818 ZFYP08048 801 aaPredicted RBP9.09□□□□□ -0.95
VPS39-204ENST00000561818 EIF5P55010 431 aaKnown RBP9.09□□□□□ -0.95
VPS39-204ENST00000561818 PTPN12Q05209 780 aaKnown RBP9.09□□□□□ -0.95
VPS39-204ENST00000561818 KRT32Q14532 448 aa9.09□□□□□ -0.95
VPS39-204ENST00000561818 TNNI3KQ59H18 835 aa9.09□□□□□ -0.95
VPS39-204ENST00000561818 C8orf37Q96NL8 207 aa9.09□□□□□ -0.95
VPS39-204ENST00000561818 TBC1D2Q9BYX2 928 aa9.09□□□□□ -0.95
VPS39-204ENST00000561818 NYXQ9GZU5 481 aa9.09□□□□□ -0.95
VPS39-204ENST00000561818 IL1RAPL2Q9NP60 686 aa9.09□□□□□ -0.95
VPS39-204ENST00000561818 SNRKQ9NRH2 765 aa9.09□□□□□ -0.95
VPS39-204ENST00000561818 CEP126Q9P2H0 1117 aa9.09□□□□□ -0.95
VPS39-204ENST00000561818 FPGT-TNNI3KV9GXZ4 949 aa9.09□□□□□ -0.95
VPS39-204ENST00000561818 TJP1Q07157 1748 aa9.08□□□□□ -0.96
VPS39-204ENST00000561818 SH3TC1Q8TE82 1336 aa9.08□□□□□ -0.96
VPS39-204ENST00000561818 NHSQ6T4R5 1651 aa9.08□□□□□ -0.96
VPS39-204ENST00000561818 AK9Q5TCS8 1911 aa9.08□□□□□ -0.96
VPS39-204ENST00000561818 ANKRD18BA2A2Z9 1011 aa9.08□□□□□ -0.96
VPS39-204ENST00000561818 GOLGA6L22H0YM25 854 aa9.08□□□□□ -0.96
VPS39-204ENST00000561818 SGSM2O43147 1006 aa9.08□□□□□ -0.96
VPS39-204ENST00000561818 CSF1RP07333 972 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 202.7 ms