RNA–Protein interactions for RNA: ENST00000560444.1

PIF1-208, Transcript of PIF1 5'-to-3' DNA helicase, human

TSL 2

Gene PIF1, Length 1,631 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PIF1-208	ENST00000560444	THSD7A	Q9UPZ6	1657 aa		29.12	■■■□□ 2.25
PIF1-208	ENST00000560444	ERC2	O15083	957 aa		29.12	■■■□□ 2.25
PIF1-208	ENST00000560444	TRIM6-TRIM34	B2RNG4	842 aa		29.11	■■■□□ 2.25
PIF1-208	ENST00000560444	REC8	O95072	547 aa		29.11	■■■□□ 2.25
PIF1-208	ENST00000560444	IFIT2	P09913	472 aa	Known RBP	29.11	■■■□□ 2.25
PIF1-208	ENST00000560444	ERVV-1	B6SEH8	477 aa		29.1	■■■□□ 2.25
PIF1-208	ENST00000560444	GLRX3	O76003	335 aa	Known RBP	29.1	■■■□□ 2.25
PIF1-208	ENST00000560444	SLC4A3	P48751	1232 aa		29.1	■■■□□ 2.25
PIF1-208	ENST00000560444	PTPN12	Q05209	780 aa	Known RBP	29.1	■■■□□ 2.25
PIF1-208	ENST00000560444	ZBTB1	Q9Y2K1	713 aa		29.1	■■■□□ 2.25
PIF1-208	ENST00000560444	LMBR1L	Q6UX01	489 aa		29.09	■■■□□ 2.25
PIF1-208	ENST00000560444	LOC102724428	A0A0B4J2F2	783 aa		29.09	■■■□□ 2.25
PIF1-208	ENST00000560444	ONECUT3	O60422	494 aa	Predicted RBP	29.09	■■■□□ 2.25
PIF1-208	ENST00000560444	SIK1	P57059	783 aa		29.09	■■■□□ 2.25
PIF1-208	ENST00000560444	ZNF772	Q68DY9	489 aa	Predicted RBP	29.09	■■■□□ 2.25
PIF1-208	ENST00000560444	RILPL2	Q969X0	211 aa		29.09	■■■□□ 2.25
PIF1-208	ENST00000560444	USP26	Q9BXU7	913 aa		29.09	■■■□□ 2.25
PIF1-208	ENST00000560444	ECHDC1	Q9NTX5	307 aa		29.09	■■■□□ 2.25
PIF1-208	ENST00000560444	TJP1	Q07157	1748 aa		29.08	■■■□□ 2.25
PIF1-208	ENST00000560444	ATP6V1A	P38606	617 aa		29.08	■■■□□ 2.25
PIF1-208	ENST00000560444	SEPT12	Q8IYM1	358 aa		29.08	■■■□□ 2.25
PIF1-208	ENST00000560444	PCCA	P05165	728 aa	Predicted RBP	29.07	■■■□□ 2.24
PIF1-208	ENST00000560444	AACS	Q86V21	672 aa		29.06	■■■□□ 2.24
PIF1-208	ENST00000560444	SIL1	Q9H173	461 aa		29.06	■■■□□ 2.24
PIF1-208	ENST00000560444	CCDC87	Q9NVE4	849 aa		29.06	■■■□□ 2.24
PIF1-208	ENST00000560444	CHML	P26374	656 aa		29.05	■■■□□ 2.24
PIF1-208	ENST00000560444	CNTROB	Q8N137	903 aa		29.05	■■■□□ 2.24
PIF1-208	ENST00000560444	ARX	Q96QS3	562 aa		29.05	■■■□□ 2.24
PIF1-208	ENST00000560444	TBC1D2	Q9BYX2	928 aa		29.05	■■■□□ 2.24
PIF1-208	ENST00000560444	TUBGCP6	Q96RT7	1819 aa		29.05	■■■□□ 2.24
PIF1-208	ENST00000560444	PALLD	Q8WX93	1383 aa		29.05	■■■□□ 2.24
PIF1-208	ENST00000560444	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	29.05	■■■□□ 2.24
PIF1-208	ENST00000560444	PLA2G12B	Q9BX93	195 aa		29.05	■■■□□ 2.24
PIF1-208	ENST00000560444	CIC	Q96RK0	1608 aa	Predicted RBP	29.05	■■■□□ 2.24
PIF1-208	ENST00000560444	EIF5	P55010	431 aa	Known RBP	29.04	■■■□□ 2.24
PIF1-208	ENST00000560444	INTS5	Q6P9B9	1019 aa	Known RBP	29.04	■■■□□ 2.24
PIF1-208	ENST00000560444	KLHDC4	Q8TBB5	520 aa		29.04	■■■□□ 2.24
PIF1-208	ENST00000560444	SNX21	Q969T3	373 aa		29.04	■■■□□ 2.24
PIF1-208	ENST00000560444	EAF2	Q96CJ1	260 aa	Predicted RBP	29.04	■■■□□ 2.24
PIF1-208	ENST00000560444	DZIP3	Q86Y13	1208 aa	Known RBP	29.03	■■■□□ 2.24
PIF1-208	ENST00000560444	KIF2C	Q99661	725 aa		29.03	■■■□□ 2.24
PIF1-208	ENST00000560444	ESYT1	Q9BSJ8	1104 aa		29.03	■■■□□ 2.24
PIF1-208	ENST00000560444	KAT6B	Q8WYB5	2073 aa		29.03	■■■□□ 2.24
PIF1-208	ENST00000560444	HLF	Q16534	295 aa		29.02	■■■□□ 2.24
PIF1-208	ENST00000560444	FAM182B	Q5T319	152 aa		29.02	■■■□□ 2.24
PIF1-208	ENST00000560444	EPB41L2	O43491	1005 aa	Known RBP	29.02	■■■□□ 2.24
PIF1-208	ENST00000560444	CDHR2	Q9BYE9	1310 aa		29.01	■■■□□ 2.23
PIF1-208	ENST00000560444	KCNQ2	O43526	872 aa		29.01	■■■□□ 2.23
PIF1-208	ENST00000560444	CRKL	P46109	303 aa	Known RBP	29.01	■■■□□ 2.23
PIF1-208	ENST00000560444	NLRP10	Q86W26	655 aa		29.01	■■■□□ 2.23
PIF1-208	ENST00000560444	RTL5	Q5HYW3	569 aa	Predicted RBP	29	■■■□□ 2.23
PIF1-208	ENST00000560444	CHMP3	Q9Y3E7	222 aa		29	■■■□□ 2.23
PIF1-208	ENST00000560444	RBM6	P78332	1123 aa	Known RBP	28.99	■■■□□ 2.23
PIF1-208	ENST00000560444	ITPK1	Q13572	414 aa		28.99	■■■□□ 2.23
PIF1-208	ENST00000560444	FBXO3	Q9UK99	471 aa		28.98	■■■□□ 2.23
PIF1-208	ENST00000560444	HSCB	Q8IWL3	235 aa		28.98	■■■□□ 2.23
PIF1-208	ENST00000560444	CCDC8	Q9H0W5	538 aa	Predicted RBP	28.98	■■■□□ 2.23
PIF1-208	ENST00000560444	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	28.98	■■■□□ 2.23
PIF1-208	ENST00000560444	CIAO1	O76071	339 aa		28.97	■■■□□ 2.23
PIF1-208	ENST00000560444	CSF1R	P07333	972 aa		28.97	■■■□□ 2.23
PIF1-208	ENST00000560444	IL15	P40933	162 aa	Predicted RBP	28.97	■■■□□ 2.23
PIF1-208	ENST00000560444	TFCP2	Q12800	502 aa		28.97	■■■□□ 2.23
PIF1-208	ENST00000560444	ZNF34	Q8IZ26	560 aa		28.97	■■■□□ 2.23
PIF1-208	ENST00000560444	GPR108	Q9NPR9	543 aa		28.97	■■■□□ 2.23
PIF1-208	ENST00000560444	TBC1D2B	Q9UPU7	963 aa		28.97	■■■□□ 2.23
PIF1-208	ENST00000560444	ZNF831	Q5JPB2	1677 aa		28.96	■■■□□ 2.23
PIF1-208	ENST00000560444	RREB1	Q92766	1687 aa		28.96	■■■□□ 2.23
PIF1-208	ENST00000560444	TNNI3K	Q59H18	835 aa		28.96	■■■□□ 2.23
PIF1-208	ENST00000560444	EVI5L	Q96CN4	794 aa		28.96	■■■□□ 2.23
PIF1-208	ENST00000560444	FAM89A	Q96GI7	184 aa		28.96	■■■□□ 2.23
PIF1-208	ENST00000560444	FPGT-TNNI3K	V9GXZ4	949 aa		28.96	■■■□□ 2.23
PIF1-208	ENST00000560444	RABEP1	Q15276	862 aa		28.94	■■■□□ 2.22
PIF1-208	ENST00000560444	CCDC57	Q2TAC2	916 aa		28.94	■■■□□ 2.22
PIF1-208	ENST00000560444	EYA2	O00167	538 aa		28.94	■■■□□ 2.22
PIF1-208	ENST00000560444	MAP4K4	O95819	1239 aa	Predicted RBP	28.94	■■■□□ 2.22
PIF1-208	ENST00000560444	ATG9A	Q7Z3C6	839 aa		28.94	■■■□□ 2.22
PIF1-208	ENST00000560444	RGS17	Q9UGC6	210 aa	Predicted RBP	28.94	■■■□□ 2.22
PIF1-208	ENST00000560444	GPT	P24298	496 aa		28.93	■■■□□ 2.22
PIF1-208	ENST00000560444	AK7	Q96M32	723 aa		28.92	■■■□□ 2.22
PIF1-208	ENST00000560444	MCC	P23508	829 aa		28.91	■■■□□ 2.22
PIF1-208	ENST00000560444	TRMT112	Q9UI30	125 aa	Known RBP	28.91	■■■□□ 2.22
PIF1-208	ENST00000560444	HIP1	O00291	1037 aa		28.91	■■■□□ 2.22
PIF1-208	ENST00000560444	ATP5J	P18859	108 aa		28.91	■■■□□ 2.22
PIF1-208	ENST00000560444	RXRB	P28702	533 aa		28.91	■■■□□ 2.22
PIF1-208	ENST00000560444	RUFY2	Q8WXA3	655 aa		28.91	■■■□□ 2.22
PIF1-208	ENST00000560444	TLR7	Q9NYK1	1049 aa	Known RBP	28.91	■■■□□ 2.22
PIF1-208	ENST00000560444	ANKRD36C	Q5JPF3	1778 aa		28.9	■■■□□ 2.22
PIF1-208	ENST00000560444	PTF1A	Q7RTS3	328 aa		28.9	■■■□□ 2.22
PIF1-208	ENST00000560444	SGSM2	O43147	1006 aa		28.89	■■■□□ 2.22
PIF1-208	ENST00000560444	CAMTA2	O94983	1202 aa		28.89	■■■□□ 2.22
PIF1-208	ENST00000560444	PARP10	Q53GL7	1025 aa		28.89	■■■□□ 2.22
PIF1-208	ENST00000560444	KRT27	Q7Z3Y8	459 aa		28.89	■■■□□ 2.22
PIF1-208	ENST00000560444	DBNL	Q9UJU6	430 aa	Known RBP	28.89	■■■□□ 2.22
PIF1-208	ENST00000560444	RGL2	O15211	777 aa		28.88	■■■□□ 2.21
PIF1-208	ENST00000560444	IFIT5	Q13325	482 aa	Known RBP	28.88	■■■□□ 2.21
PIF1-208	ENST00000560444	IRS4	O14654	1257 aa	Predicted RBP	28.87	■■■□□ 2.21
PIF1-208	ENST00000560444	ANAPC15	P60006	121 aa		28.87	■■■□□ 2.21
PIF1-208	ENST00000560444	POTEA	Q6S8J7	498 aa		28.87	■■■□□ 2.21
PIF1-208	ENST00000560444	ANO2	Q9NQ90	1003 aa		28.87	■■■□□ 2.21
PIF1-208	ENST00000560444	BRWD3	Q6RI45	1802 aa		28.87	■■■□□ 2.21

Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms