RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 SEC24BO95487 1268 aa15.35■□□□□ 0.05
SHMT2-233ENST00000557529 FOXO4P98177 505 aa15.35■□□□□ 0.05
SHMT2-233ENST00000557529 HLFQ16534 295 aa15.35■□□□□ 0.05
SHMT2-233ENST00000557529 NLRP10Q86W26 655 aa15.35■□□□□ 0.05
SHMT2-233ENST00000557529 ZBTB38Q8NAP3 1195 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-233ENST00000557529 PLA2G12BQ9BX93 195 aa15.35■□□□□ 0.05
SHMT2-233ENST00000557529 TBC1D2BQ9UPU7 963 aa15.35■□□□□ 0.05
SHMT2-233ENST00000557529 PA2G4Q9UQ80 394 aaKnown RBP15.35■□□□□ 0.05
SHMT2-233ENST00000557529 COL5A3P25940 1745 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-233ENST00000557529 CDHR2Q9BYE9 1310 aa15.34■□□□□ 0.05
SHMT2-233ENST00000557529 RFX5P48382 616 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-233ENST00000557529 RC3H1Q5TC82 1133 aaKnown RBP15.34■□□□□ 0.05
SHMT2-233ENST00000557529 LMBR1LQ6UX01 489 aa15.34■□□□□ 0.05
SHMT2-233ENST00000557529 BTAF1O14981 1849 aa15.33■□□□□ 0.05
SHMT2-233ENST00000557529 RGL2O15211 777 aa15.33■□□□□ 0.04
SHMT2-233ENST00000557529 CASC1Q6TDU7 716 aa15.33■□□□□ 0.04
SHMT2-233ENST00000557529 FAM196AQ6ZSG2 479 aa15.33■□□□□ 0.04
SHMT2-233ENST00000557529 PTF1AQ7RTS3 328 aa15.33■□□□□ 0.04
SHMT2-233ENST00000557529 ZNF34Q8IZ26 560 aa15.33■□□□□ 0.04
SHMT2-233ENST00000557529 LINC00116Q8NCU8 138 aa15.33■□□□□ 0.04
SHMT2-233ENST00000557529 DDRGK1Q96HY6 314 aa15.33■□□□□ 0.04
SHMT2-233ENST00000557529 GPATCH3Q96I76 525 aa15.33■□□□□ 0.04
SHMT2-233ENST00000557529 IPO9Q96P70 1041 aaKnown RBP15.33■□□□□ 0.04
SHMT2-233ENST00000557529 BCL11BQ9C0K0 894 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-233ENST00000557529 USP42Q9H9J4 1324 aaKnown RBP15.32■□□□□ 0.04
SHMT2-233ENST00000557529 ANKRD36CQ5JPF3 1778 aa15.32■□□□□ 0.04
SHMT2-233ENST00000557529 SDSP20132 328 aa15.32■□□□□ 0.04
SHMT2-233ENST00000557529 GPTP24298 496 aa15.32■□□□□ 0.04
SHMT2-233ENST00000557529 RBM6P78332 1123 aaKnown RBP15.32■□□□□ 0.04
SHMT2-233ENST00000557529 PTPN12Q05209 780 aaKnown RBP15.32■□□□□ 0.04
SHMT2-233ENST00000557529 RTL5Q5HYW3 569 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-233ENST00000557529 FAM182BQ5T319 152 aa15.32■□□□□ 0.04
SHMT2-233ENST00000557529 TBC1D9Q6ZT07 1266 aa15.32■□□□□ 0.04
SHMT2-233ENST00000557529 KRT27Q7Z3Y8 459 aa15.32■□□□□ 0.04
SHMT2-233ENST00000557529 ZNF652Q9Y2D9 606 aa15.32■□□□□ 0.04
SHMT2-233ENST00000557529 TTC41PQ6P2S7 1318 aa15.31■□□□□ 0.04
SHMT2-233ENST00000557529 SASH1O94885 1247 aa15.31■□□□□ 0.04
SHMT2-233ENST00000557529 CAMTA2O94983 1202 aa15.31■□□□□ 0.04
SHMT2-233ENST00000557529 IFIT2P09913 472 aaKnown RBP15.31■□□□□ 0.04
SHMT2-233ENST00000557529 PARP10Q53GL7 1025 aa15.31■□□□□ 0.04
SHMT2-233ENST00000557529 NUTM1Q86Y26 1132 aa15.31■□□□□ 0.04
SHMT2-233ENST00000557529 CCNL1Q9UK58 526 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-233ENST00000557529 CHMP3Q9Y3E7 222 aa15.31■□□□□ 0.04
SHMT2-233ENST00000557529 MYH14Q7Z406 1995 aaKnown RBP15.3■□□□□ 0.04
SHMT2-233ENST00000557529 MFAP1P55081 439 aaKnown RBP15.3■□□□□ 0.04
SHMT2-233ENST00000557529 CLEC4GQ6UXB4 293 aa15.3■□□□□ 0.04
SHMT2-233ENST00000557529 FAM89AQ96GI7 184 aa15.3■□□□□ 0.04
SHMT2-233ENST00000557529 AK7Q96M32 723 aa15.3■□□□□ 0.04
SHMT2-233ENST00000557529 TBC1D32Q96NH3 1257 aa15.3■□□□□ 0.04
SHMT2-233ENST00000557529 SIL1Q9H173 461 aa15.3■□□□□ 0.04
SHMT2-233ENST00000557529 TRMT112Q9UI30 125 aaKnown RBP15.3■□□□□ 0.04
SHMT2-233ENST00000557529 NUP98P52948 1817 aa15.3■□□□□ 0.04
SHMT2-233ENST00000557529 SBF2Q86WG5 1849 aa15.3■□□□□ 0.04
SHMT2-233ENST00000557529 ERC2O15083 957 aa15.29■□□□□ 0.04
SHMT2-233ENST00000557529 HSP90B1P14625 803 aaKnown RBP15.29■□□□□ 0.04
SHMT2-233ENST00000557529 AACSQ86V21 672 aa15.29■□□□□ 0.04
SHMT2-233ENST00000557529 ECHDC1Q9NTX5 307 aa15.29■□□□□ 0.04
SHMT2-233ENST00000557529 FBXO3Q9UK99 471 aa15.29■□□□□ 0.04
SHMT2-233ENST00000557529 RPS6KA4O75676 772 aa15.28■□□□□ 0.04
SHMT2-233ENST00000557529 GLRX3O76003 335 aaKnown RBP15.28■□□□□ 0.04
SHMT2-233ENST00000557529 CSF1RP07333 972 aa15.28■□□□□ 0.04
SHMT2-233ENST00000557529 HMGB2P26583 209 aaKnown RBP15.28■□□□□ 0.04
SHMT2-233ENST00000557529 CCDC57Q2TAC2 916 aa15.28■□□□□ 0.04
SHMT2-233ENST00000557529 KLHDC4Q8TBB5 520 aa15.28■□□□□ 0.04
SHMT2-233ENST00000557529 UBN2Q6ZU65 1347 aa15.28■□□□□ 0.04
SHMT2-233ENST00000557529 IRS4O14654 1257 aaPredicted RBP15.27■□□□□ 0.04
SHMT2-233ENST00000557529 CIAO1O76071 339 aa15.27■□□□□ 0.04
SHMT2-233ENST00000557529 IL15P40933 162 aaPredicted RBP15.27■□□□□ 0.04
SHMT2-233ENST00000557529 TSHZ3Q63HK5 1081 aa15.27■□□□□ 0.04
SHMT2-233ENST00000557529 PI4K2BQ8TCG2 481 aa15.27■□□□□ 0.04
SHMT2-233ENST00000557529 UTP14AQ9BVJ6 771 aaKnown RBP15.27■□□□□ 0.04
SHMT2-233ENST00000557529 C22orf23Q9BZE7 217 aa15.27■□□□□ 0.04
SHMT2-233ENST00000557529 LY75O60449 1722 aa15.27■□□□□ 0.04
SHMT2-233ENST00000557529 SH3TC1Q8TE82 1336 aa15.27■□□□□ 0.03
SHMT2-233ENST00000557529 TRIM6-TRIM34B2RNG4 842 aa15.26■□□□□ 0.03
SHMT2-233ENST00000557529 PDE8AO60658 829 aa15.26■□□□□ 0.03
SHMT2-233ENST00000557529 EAF2Q96CJ1 260 aaPredicted RBP15.26■□□□□ 0.03
SHMT2-233ENST00000557529 EYA2O00167 538 aa15.25■□□□□ 0.03
SHMT2-233ENST00000557529 CTSWP56202 376 aa15.25■□□□□ 0.03
SHMT2-233ENST00000557529 KCNQ4P56696 695 aa15.25■□□□□ 0.03
SHMT2-233ENST00000557529 IFIT5Q13325 482 aaKnown RBP15.25■□□□□ 0.03
SHMT2-233ENST00000557529 GPR108Q9NPR9 543 aa15.25■□□□□ 0.03
SHMT2-233ENST00000557529 NIP7Q9Y221 180 aaKnown RBP eCLIP15.25■□□□□ 0.03
SHMT2-233ENST00000557529 RTCBQ9Y3I0 505 aaKnown RBP15.25■□□□□ 0.03
SHMT2-233ENST00000557529 BCORQ6W2J9 1755 aa15.25■□□□□ 0.03
SHMT2-233ENST00000557529 GNPATO15228 680 aa15.24■□□□□ 0.03
SHMT2-233ENST00000557529 TFCP2Q12800 502 aa15.24■□□□□ 0.03
SHMT2-233ENST00000557529 TNNI3KQ59H18 835 aa15.24■□□□□ 0.03
SHMT2-233ENST00000557529 SLC27A3Q5K4L6 730 aa15.24■□□□□ 0.03
SHMT2-233ENST00000557529 SUSD4Q5VX71 490 aa15.24■□□□□ 0.03
SHMT2-233ENST00000557529 ATG9AQ7Z3C6 839 aa15.24■□□□□ 0.03
SHMT2-233ENST00000557529 CNTROBQ8N137 903 aa15.24■□□□□ 0.03
SHMT2-233ENST00000557529 TTLL11Q8NHH1 800 aa15.24■□□□□ 0.03
SHMT2-233ENST00000557529 RILPL2Q969X0 211 aa15.24■□□□□ 0.03
SHMT2-233ENST00000557529 NARFQ9UHQ1 456 aa15.24■□□□□ 0.03
SHMT2-233ENST00000557529 FPGT-TNNI3KV9GXZ4 949 aa15.24■□□□□ 0.03
SHMT2-233ENST00000557529 RBM25P49756 843 aaKnown RBP15.24■□□□□ 0.03
SHMT2-233ENST00000557529 TAF7LQ5H9L4 462 aa15.24■□□□□ 0.03
SHMT2-233ENST00000557529 TUBGCP6Q96RT7 1819 aa15.23■□□□□ 0.03
SHMT2-233ENST00000557529 ANKRD18BA2A2Z9 1011 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms