RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ERBINQ96RT1 1412 aa16.11■□□□□ 0.17
SHMT2-226ENST00000556825 CCDC96Q2M329 555 aa16.11■□□□□ 0.17
SHMT2-226ENST00000556825 N4BP2L2Q92802 583 aaPredicted RBP16.11■□□□□ 0.17
SHMT2-226ENST00000556825 VPS18Q9P253 973 aa16.11■□□□□ 0.17
SHMT2-226ENST00000556825 CPSF2Q9P2I0 782 aaKnown RBP16.11■□□□□ 0.17
SHMT2-226ENST00000556825 EFCAB8A8MWE9 144 aa16.11■□□□□ 0.17
SHMT2-226ENST00000556825 TMCO5BA8MYB1 307 aa16.11■□□□□ 0.17
SHMT2-226ENST00000556825 MYBL2P10244 700 aa16.11■□□□□ 0.17
SHMT2-226ENST00000556825 TRIM27P14373 513 aa16.11■□□□□ 0.17
SHMT2-226ENST00000556825 CCT2P78371 535 aaKnown RBP16.11■□□□□ 0.17
SHMT2-226ENST00000556825 TPRNQ4KMQ1 711 aa16.11■□□□□ 0.17
SHMT2-226ENST00000556825 CNPY2Q9Y2B0 182 aa16.11■□□□□ 0.17
SHMT2-226ENST00000556825 FANCAO15360 1455 aa16.1■□□□□ 0.17
SHMT2-226ENST00000556825 TADA3O75528 432 aa16.1■□□□□ 0.17
SHMT2-226ENST00000556825 NEFHP12036 1026 aa16.1■□□□□ 0.17
SHMT2-226ENST00000556825 NF2P35240 595 aa16.1■□□□□ 0.17
SHMT2-226ENST00000556825 TMF1P82094 1093 aa16.1■□□□□ 0.17
SHMT2-226ENST00000556825 ICA1Q05084 483 aa16.1■□□□□ 0.17
SHMT2-226ENST00000556825 WWC2Q6AWC2 1192 aa16.1■□□□□ 0.17
SHMT2-226ENST00000556825 NUTM1Q86Y26 1132 aa16.1■□□□□ 0.17
SHMT2-226ENST00000556825 KCNB2Q92953 911 aa16.1■□□□□ 0.17
SHMT2-226ENST00000556825 DDX11Q96FC9 970 aa16.1■□□□□ 0.17
SHMT2-226ENST00000556825 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.1■□□□□ 0.17
SHMT2-226ENST00000556825 MAGI2Q86UL8 1455 aa16.1■□□□□ 0.17
SHMT2-226ENST00000556825 RTN2O75298 545 aa16.1■□□□□ 0.17
SHMT2-226ENST00000556825 CCNHP51946 323 aaPredicted RBP16.1■□□□□ 0.17
SHMT2-226ENST00000556825 CCDC30Q5VVM6 783 aa16.1■□□□□ 0.17
SHMT2-226ENST00000556825 AFAP1Q8N556 730 aa16.1■□□□□ 0.17
SHMT2-226ENST00000556825 ARMC2Q8NEN0 867 aa16.1■□□□□ 0.17
SHMT2-226ENST00000556825 TDRD7Q8NHU6 1098 aaKnown RBP16.1■□□□□ 0.17
SHMT2-226ENST00000556825 SPATS2LQ9NUQ6 558 aaKnown RBP16.1■□□□□ 0.17
SHMT2-226ENST00000556825 CLTCL1P53675 1640 aa16.09■□□□□ 0.17
SHMT2-226ENST00000556825 KINO60870 393 aaKnown RBP16.09■□□□□ 0.17
SHMT2-226ENST00000556825 CCZ1BP86790 482 aa16.09■□□□□ 0.17
SHMT2-226ENST00000556825 CCZ1P86791 482 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-226ENST00000556825 INTS3Q68E01 1043 aaKnown RBP16.09■□□□□ 0.17
SHMT2-226ENST00000556825 CBX8Q9HC52 389 aa16.09■□□□□ 0.17
SHMT2-226ENST00000556825 SOS1Q07889 1333 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-226ENST00000556825 MAP2K7O14733 419 aa16.09■□□□□ 0.17
SHMT2-226ENST00000556825 FBXW10Q5XX13 1052 aa16.09■□□□□ 0.17
SHMT2-226ENST00000556825 PHF23Q9BUL5 403 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-226ENST00000556825 SRCIN1Q9C0H9 1055 aa16.09■□□□□ 0.17
SHMT2-226ENST00000556825 MRPL12P52815 198 aaKnown RBP16.08■□□□□ 0.16
SHMT2-226ENST00000556825 GPR161Q8N6U8 529 aaKnown RBP16.08■□□□□ 0.16
SHMT2-226ENST00000556825 SRGAP3O43295 1099 aa16.07■□□□□ 0.16
SHMT2-226ENST00000556825 GSPT1P15170 499 aaKnown RBP16.07■□□□□ 0.16
SHMT2-226ENST00000556825 LIG3P49916 1009 aa16.07■□□□□ 0.16
SHMT2-226ENST00000556825 TYRO3Q06418 890 aa16.07■□□□□ 0.16
SHMT2-226ENST00000556825 PREPLQ4J6C6 727 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-226ENST00000556825 ATF7IPQ6VMQ6 1270 aa16.07■□□□□ 0.16
SHMT2-226ENST00000556825 BAG1Q99933 345 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-226ENST00000556825 AKAP2Q9Y2D5 859 aa16.07■□□□□ 0.16
SHMT2-226ENST00000556825 EIF3JO75822 258 aaKnown RBP16.07■□□□□ 0.16
SHMT2-226ENST00000556825 ARID5BQ14865 1188 aa16.07■□□□□ 0.16
SHMT2-226ENST00000556825 THOC1Q96FV9 657 aaKnown RBP16.07■□□□□ 0.16
SHMT2-226ENST00000556825 PPP6R1Q9UPN7 881 aa16.07■□□□□ 0.16
SHMT2-226ENST00000556825 IQGAP3Q86VI3 1631 aa16.06■□□□□ 0.16
SHMT2-226ENST00000556825 RDXP35241 583 aaKnown RBP16.06■□□□□ 0.16
SHMT2-226ENST00000556825 APOBRQ0VD83 1088 aa16.06■□□□□ 0.16
SHMT2-226ENST00000556825 MSL3Q8N5Y2 521 aaKnown RBP16.06■□□□□ 0.16
SHMT2-226ENST00000556825 UTP14AQ9BVJ6 771 aaKnown RBP16.06■□□□□ 0.16
SHMT2-226ENST00000556825 PLA2R1Q13018 1463 aa16.06■□□□□ 0.16
SHMT2-226ENST00000556825 CCDC69A6NI79 296 aa16.06■□□□□ 0.16
SHMT2-226ENST00000556825 NEK4P51957 841 aa16.06■□□□□ 0.16
SHMT2-226ENST00000556825 CC2D2BQ6DHV5 1058 aa16.06■□□□□ 0.16
SHMT2-226ENST00000556825 PRPF38AQ8NAV1 312 aaKnown RBP16.06■□□□□ 0.16
SHMT2-226ENST00000556825 TRPM1Q7Z4N2 1603 aa16.06■□□□□ 0.16
SHMT2-226ENST00000556825 EXOC5O00471 708 aa16.05■□□□□ 0.16
SHMT2-226ENST00000556825 CHMLP26374 656 aa16.05■□□□□ 0.16
SHMT2-226ENST00000556825 RPS6KA3P51812 740 aa16.05■□□□□ 0.16
SHMT2-226ENST00000556825 GNAI1P63096 354 aa16.05■□□□□ 0.16
SHMT2-226ENST00000556825 TMEM57Q8N5G2 664 aa16.05■□□□□ 0.16
SHMT2-226ENST00000556825 CABS1Q96KC9 395 aa16.05■□□□□ 0.16
SHMT2-226ENST00000556825 CHUKO15111 745 aa16.04■□□□□ 0.16
SHMT2-226ENST00000556825 EVCP57679 992 aa16.04■□□□□ 0.16
SHMT2-226ENST00000556825 RBBP5Q15291 538 aaKnown RBP16.04■□□□□ 0.16
SHMT2-226ENST00000556825 MAP3K11Q16584 847 aa16.04■□□□□ 0.16
SHMT2-226ENST00000556825 POTEDQ86YR6 584 aa16.04■□□□□ 0.16
SHMT2-226ENST00000556825 ZKSCAN4Q969J2 545 aaPredicted RBP16.04■□□□□ 0.16
SHMT2-226ENST00000556825 MRFAP1L1Q96HT8 127 aa16.04■□□□□ 0.16
SHMT2-226ENST00000556825 ODF2LQ9ULJ1 636 aa16.04■□□□□ 0.16
SHMT2-226ENST00000556825 ASXL1Q8IXJ9 1541 aa16.04■□□□□ 0.16
SHMT2-226ENST00000556825 ADGRL1O94910 1474 aa16.04■□□□□ 0.16
SHMT2-226ENST00000556825 GORABQ5T7V8 394 aa16.04■□□□□ 0.16
SHMT2-226ENST00000556825 ANKRD18AQ8IVF6 992 aa16.04■□□□□ 0.16
SHMT2-226ENST00000556825 ZFYVE16Q7Z3T8 1539 aa16.04■□□□□ 0.16
SHMT2-226ENST00000556825 PHLPP2Q6ZVD8 1323 aa16.04■□□□□ 0.16
SHMT2-226ENST00000556825 EME2A4GXA9 379 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-226ENST00000556825 SNUPNO95149 360 aaKnown RBP16.03■□□□□ 0.16
SHMT2-226ENST00000556825 PSMD2Q13200 908 aa16.03■□□□□ 0.16
SHMT2-226ENST00000556825 LONRF2Q1L5Z9 754 aa16.03■□□□□ 0.16
SHMT2-226ENST00000556825 SLC5A9Q2M3M2 681 aa16.03■□□□□ 0.16
SHMT2-226ENST00000556825 LRRFIP1Q32MZ4 808 aaKnown RBP16.03■□□□□ 0.16
SHMT2-226ENST00000556825 ANO6Q4KMQ2 910 aa16.03■□□□□ 0.16
SHMT2-226ENST00000556825 MICAL1Q8TDZ2 1067 aa16.03■□□□□ 0.16
SHMT2-226ENST00000556825 PPP1R13BQ96KQ4 1090 aa16.03■□□□□ 0.16
SHMT2-226ENST00000556825 PSDA5PKW4 1024 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-226ENST00000556825 SARM1Q6SZW1 724 aa16.03■□□□□ 0.16
SHMT2-226ENST00000556825 TRIM74Q86UV6 250 aa16.03■□□□□ 0.16
SHMT2-226ENST00000556825 TRIM73Q86UV7 250 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms