RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 MPSTP25325 297 aa8.64□□□□□ -1.03
SCFD1-221ENST00000556534 SRSF11Q05519 484 aaKnown RBP8.64□□□□□ -1.03
SCFD1-221ENST00000556534 ABTB2Q8N961 1025 aa8.64□□□□□ -1.03
SCFD1-221ENST00000556534 ADAMTS2O95450 1211 aa8.63□□□□□ -1.03
SCFD1-221ENST00000556534 SLURP2P0DP57 97 aa8.63□□□□□ -1.03
SCFD1-221ENST00000556534 BMP4P12644 408 aa8.63□□□□□ -1.03
SCFD1-221ENST00000556534 NPR3P17342 541 aa8.63□□□□□ -1.03
SCFD1-221ENST00000556534 KCNA1Q09470 495 aa8.63□□□□□ -1.03
SCFD1-221ENST00000556534 ANO2Q9NQ90 1003 aa8.63□□□□□ -1.03
SCFD1-221ENST00000556534 KCNH4Q9UQ05 1017 aa8.63□□□□□ -1.03
SCFD1-221ENST00000556534 LORP23490 312 aaPredicted RBP8.62□□□□□ -1.03
SCFD1-221ENST00000556534 ZAP70P43403 619 aa8.62□□□□□ -1.03
SCFD1-221ENST00000556534 SF3B2Q13435 895 aaKnown RBP8.62□□□□□ -1.03
SCFD1-221ENST00000556534 CCER1Q8TC90 406 aaPredicted RBP8.62□□□□□ -1.03
SCFD1-221ENST00000556534 H3BRB1 525 aa8.61□□□□□ -1.03
SCFD1-221ENST00000556534 ICMTO60725 284 aa8.61□□□□□ -1.03
SCFD1-221ENST00000556534 EPB42P16452 691 aa8.61□□□□□ -1.03
SCFD1-221ENST00000556534 MAP2K3P46734 347 aa8.61□□□□□ -1.03
SCFD1-221ENST00000556534 SLC30A3Q99726 388 aa8.61□□□□□ -1.03
SCFD1-221ENST00000556534 TUT1Q9H6E5 874 aaKnown RBP8.61□□□□□ -1.03
SCFD1-221ENST00000556534 NSFL1CQ9UNZ2 370 aaKnown RBP8.61□□□□□ -1.03
SCFD1-221ENST00000556534 USP20Q9Y2K6 914 aa8.61□□□□□ -1.03
SCFD1-221ENST00000556534 EIF1AXP47813 144 aaKnown RBP8.6□□□□□ -1.03
SCFD1-221ENST00000556534 FKBP4Q02790 459 aaKnown RBP eCLIP8.6□□□□□ -1.03
SCFD1-221ENST00000556534 SPEM2Q0P670 501 aa8.6□□□□□ -1.03
SCFD1-221ENST00000556534 ATCAYQ86WG3 371 aa8.6□□□□□ -1.03
SCFD1-221ENST00000556534 HOMEZQ8IX15 550 aa8.6□□□□□ -1.03
SCFD1-221ENST00000556534 RTCBQ9Y3I0 505 aaKnown RBP8.6□□□□□ -1.03
SCFD1-221ENST00000556534 TRIP4Q15650 581 aaPredicted RBP8.59□□□□□ -1.03
SCFD1-221ENST00000556534 ECM1Q16610 540 aa8.59□□□□□ -1.03
SCFD1-221ENST00000556534 NOM1Q5C9Z4 860 aaKnown RBP8.59□□□□□ -1.03
SCFD1-221ENST00000556534 ZNF468Q5VIY5 522 aaPredicted RBP8.59□□□□□ -1.03
SCFD1-221ENST00000556534 RGL4Q8IZJ4 473 aa8.59□□□□□ -1.03
SCFD1-221ENST00000556534 KCNMB2Q9Y691 235 aa8.59□□□□□ -1.03
SCFD1-221ENST00000556534 IVNS1ABPQ9Y6Y0 642 aa8.59□□□□□ -1.03
SCFD1-221ENST00000556534 FAM13AO94988 1023 aa8.58□□□□□ -1.04
SCFD1-221ENST00000556534 ARAFP10398 606 aa8.58□□□□□ -1.04
SCFD1-221ENST00000556534 RAB44Q7Z6P3 723 aaPredicted RBP8.58□□□□□ -1.04
SCFD1-221ENST00000556534 ACDQ96AP0 544 aa8.58□□□□□ -1.04
SCFD1-221ENST00000556534 OXCT2Q9BYC2 517 aaPredicted RBP8.58□□□□□ -1.04
SCFD1-221ENST00000556534 GSX2Q9BZM3 304 aa8.58□□□□□ -1.04
SCFD1-221ENST00000556534 AVENQ9NQS1 362 aaPredicted RBP8.58□□□□□ -1.04
SCFD1-221ENST00000556534 SOWAHDA6NJG2 315 aa8.57□□□□□ -1.04
SCFD1-221ENST00000556534 GLYCTKQ8IVS8 523 aa8.57□□□□□ -1.04
SCFD1-221ENST00000556534 GPR152Q8TDT2 470 aa8.57□□□□□ -1.04
SCFD1-221ENST00000556534 WHAMMQ8TF30 809 aa8.57□□□□□ -1.04
SCFD1-221ENST00000556534 KLF15Q9UIH9 416 aa8.57□□□□□ -1.04
SCFD1-221ENST00000556534 ARHGAP4P98171 946 aa8.56□□□□□ -1.04
SCFD1-221ENST00000556534 ZNF385CQ66K41 422 aaPredicted RBP8.56□□□□□ -1.04
SCFD1-221ENST00000556534 ALKBH2Q6NS38 261 aa8.56□□□□□ -1.04
SCFD1-221ENST00000556534 SLCO4C1Q6ZQN7 724 aa8.56□□□□□ -1.04
SCFD1-221ENST00000556534 C11orf16Q9NQ32 467 aa8.56□□□□□ -1.04
SCFD1-221ENST00000556534 FAM13BQ9NYF5 915 aa8.56□□□□□ -1.04
SCFD1-221ENST00000556534 PATL2C9JE40 543 aaKnown RBP8.55□□□□□ -1.04
SCFD1-221ENST00000556534 FZD6O60353 706 aa8.55□□□□□ -1.04
SCFD1-221ENST00000556534 EGFRP00533 1210 aa8.55□□□□□ -1.04
SCFD1-221ENST00000556534 ADH6P28332 368 aa8.55□□□□□ -1.04
SCFD1-221ENST00000556534 PCBP4P57723 403 aaKnown RBP8.55□□□□□ -1.04
SCFD1-221ENST00000556534 CCINQ13939 588 aa8.55□□□□□ -1.04
SCFD1-221ENST00000556534 LYPD4Q6UWN0 246 aa8.55□□□□□ -1.04
SCFD1-221ENST00000556534 SYT9Q86SS6 491 aa8.55□□□□□ -1.04
SCFD1-221ENST00000556534 FCHSD1Q86WN1 690 aa8.55□□□□□ -1.04
SCFD1-221ENST00000556534 CMTR1Q8N1G2 835 aaKnown RBP8.55□□□□□ -1.04
SCFD1-221ENST00000556534 KCTD17Q8N5Z5 321 aa8.55□□□□□ -1.04
SCFD1-221ENST00000556534 EDEM1Q92611 657 aa8.55□□□□□ -1.04
SCFD1-221ENST00000556534 GGA1Q9UJY5 639 aa8.55□□□□□ -1.04
SCFD1-221ENST00000556534 GDF2Q9UK05 429 aaPredicted RBP8.55□□□□□ -1.04
SCFD1-221ENST00000556534 PRR12Q9ULL5 1215 aa8.55□□□□□ -1.04
SCFD1-221ENST00000556534 NEURL1BA8MQ27 555 aa8.54□□□□□ -1.04
SCFD1-221ENST00000556534 XYLBO75191 536 aa8.54□□□□□ -1.04
SCFD1-221ENST00000556534 PDGFAP04085 211 aa8.54□□□□□ -1.04
SCFD1-221ENST00000556534 CELA2BP08218 269 aaPredicted RBP8.54□□□□□ -1.04
SCFD1-221ENST00000556534 C1orf229Q6ZS94 237 aaPredicted RBP8.54□□□□□ -1.04
SCFD1-221ENST00000556534 AEBP1Q8IUX7 1158 aa8.54□□□□□ -1.04
SCFD1-221ENST00000556534 GOLGA6L1Q8N7Z2 621 aa8.54□□□□□ -1.04
SCFD1-221ENST00000556534 PIK3R5Q8WYR1 880 aa8.54□□□□□ -1.04
SCFD1-221ENST00000556534 BHMTQ93088 406 aa8.54□□□□□ -1.04
SCFD1-221ENST00000556534 NUDT16Q96DE0 195 aaKnown RBP8.54□□□□□ -1.04
SCFD1-221ENST00000556534 MDFIQ99750 246 aa8.54□□□□□ -1.04
SCFD1-221ENST00000556534 SIN3BO75182 1162 aa8.53□□□□□ -1.04
SCFD1-221ENST00000556534 NFKB1P19838 968 aa8.53□□□□□ -1.04
SCFD1-221ENST00000556534 MZF1P28698 734 aaPredicted RBP8.53□□□□□ -1.04
SCFD1-221ENST00000556534 INSM1Q01101 510 aaPredicted RBP8.53□□□□□ -1.04
SCFD1-221ENST00000556534 ZSCAN1Q8NBB4 408 aa8.53□□□□□ -1.04
SCFD1-221ENST00000556534 EFCC1Q9HA90 598 aa8.53□□□□□ -1.04
SCFD1-221ENST00000556534 ZFATQ9P243 1243 aa8.53□□□□□ -1.04
SCFD1-221ENST00000556534 BCRP11274 1271 aa8.52□□□□□ -1.05
SCFD1-221ENST00000556534 DNM1Q05193 864 aaKnown RBP8.52□□□□□ -1.05
SCFD1-221ENST00000556534 KRT25Q7Z3Z0 450 aa8.52□□□□□ -1.05
SCFD1-221ENST00000556534 CCDC87Q9NVE4 849 aa8.52□□□□□ -1.05
SCFD1-221ENST00000556534 POLIQ9UNA4 740 aa8.52□□□□□ -1.05
SCFD1-221ENST00000556534 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.52□□□□□ -1.05
SCFD1-221ENST00000556534 UBAP1LF5GYI3 381 aa8.51□□□□□ -1.05
SCFD1-221ENST00000556534 OIP5O43482 229 aa8.51□□□□□ -1.05
SCFD1-221ENST00000556534 SASH3O75995 380 aa8.51□□□□□ -1.05
SCFD1-221ENST00000556534 EPXP11678 715 aa8.51□□□□□ -1.05
SCFD1-221ENST00000556534 NEUROD1Q13562 356 aa8.51□□□□□ -1.05
SCFD1-221ENST00000556534 SVOPQ8N4V2 548 aa8.51□□□□□ -1.05
SCFD1-221ENST00000556534 TNFRSF25Q93038 417 aa8.51□□□□□ -1.05
SCFD1-221ENST00000556534 PNMA5Q96PV4 448 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms