RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 LMOD2Q6P5Q4 547 aa16.17■□□□□ 0.18
SHMT2-222ENST00000555774 EAF2Q96CJ1 260 aaPredicted RBP16.17■□□□□ 0.18
SHMT2-222ENST00000555774 SCN11AQ9UI33 1791 aa16.17■□□□□ 0.18
SHMT2-222ENST00000555774 IGKV5-2P06315 115 aa16.16■□□□□ 0.18
SHMT2-222ENST00000555774 ALDH8A1Q9H2A2 487 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-222ENST00000555774 ZKSCAN5Q9Y2L8 839 aa16.16■□□□□ 0.18
SHMT2-222ENST00000555774 RBM8AQ9Y5S9 174 aaKnown RBP16.16■□□□□ 0.18
SHMT2-222ENST00000555774 JCADQ9P266 1359 aa16.16■□□□□ 0.18
SHMT2-222ENST00000555774 NEURL1BA8MQ27 555 aa16.16■□□□□ 0.18
SHMT2-222ENST00000555774 TATP17735 454 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-222ENST00000555774 RNF20Q5VTR2 975 aa16.16■□□□□ 0.18
SHMT2-222ENST00000555774 CREB3L3Q68CJ9 461 aa16.16■□□□□ 0.18
SHMT2-222ENST00000555774 METTL22Q9BUU2 404 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-222ENST00000555774 RFX7Q2KHR2 1363 aa16.16■□□□□ 0.18
SHMT2-222ENST00000555774 C5P01031 1676 aa16.15■□□□□ 0.18
SHMT2-222ENST00000555774 MED23Q9ULK4 1368 aa16.15■□□□□ 0.18
SHMT2-222ENST00000555774 NMIQ13287 307 aaPredicted RBP16.15■□□□□ 0.18
SHMT2-222ENST00000555774 GCKRQ14397 625 aa16.15■□□□□ 0.18
SHMT2-222ENST00000555774 ANKRD1Q15327 319 aa16.15■□□□□ 0.18
SHMT2-222ENST00000555774 CNPY2Q9Y2B0 182 aa16.15■□□□□ 0.18
SHMT2-222ENST00000555774 PHKG2P15735 406 aa16.14■□□□□ 0.18
SHMT2-222ENST00000555774 GJB2P29033 226 aa16.14■□□□□ 0.18
SHMT2-222ENST00000555774 AIMP1Q12904 312 aaKnown RBP16.14■□□□□ 0.18
SHMT2-222ENST00000555774 ADCK5Q3MIX3 580 aa16.14■□□□□ 0.18
SHMT2-222ENST00000555774 GDPD2Q9HCC8 539 aa16.14■□□□□ 0.18
SHMT2-222ENST00000555774 LARGE1O95461 756 aa16.14■□□□□ 0.17
SHMT2-222ENST00000555774 CCDC83Q8IWF9 413 aa16.14■□□□□ 0.17
SHMT2-222ENST00000555774 HMG20BQ9P0W2 317 aa16.14■□□□□ 0.17
SHMT2-222ENST00000555774 MTMR6Q9Y217 621 aa16.14■□□□□ 0.17
SHMT2-222ENST00000555774 KCNJ4P48050 445 aa16.13■□□□□ 0.17
SHMT2-222ENST00000555774 C19orf44Q9H6X5 657 aa16.13■□□□□ 0.17
SHMT2-222ENST00000555774 COPRSQ9NQ92 184 aa16.13■□□□□ 0.17
SHMT2-222ENST00000555774 SLC27A2O14975 620 aa16.13■□□□□ 0.17
SHMT2-222ENST00000555774 PROSER2Q86WR7 435 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-222ENST00000555774 IFNL2Q8IZJ0 200 aa16.13■□□□□ 0.17
SHMT2-222ENST00000555774 XAGE3Q8WTP9 111 aa16.13■□□□□ 0.17
SHMT2-222ENST00000555774 FSD1Q9BTV5 496 aa16.13■□□□□ 0.17
SHMT2-222ENST00000555774 CCDC8Q9H0W5 538 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-222ENST00000555774 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.13■□□□□ 0.17
SHMT2-222ENST00000555774 CPA1P15085 419 aa16.12■□□□□ 0.17
SHMT2-222ENST00000555774 TSGA10IPQ3SY00 556 aa16.12■□□□□ 0.17
SHMT2-222ENST00000555774 FOXD4L6Q3SYB3 417 aaPredicted RBP16.12■□□□□ 0.17
SHMT2-222ENST00000555774 FOXD4L3Q6VB84 417 aaPredicted RBP16.12■□□□□ 0.17
SHMT2-222ENST00000555774 RNF214Q8ND24 703 aa16.12■□□□□ 0.17
SHMT2-222ENST00000555774 FAM227BQ96M60 508 aa16.12■□□□□ 0.17
SHMT2-222ENST00000555774 SNRPA1P09661 255 aaKnown RBP16.12■□□□□ 0.17
SHMT2-222ENST00000555774 RGPD5Q99666 1765 aa16.11■□□□□ 0.17
SHMT2-222ENST00000555774 PDCP20941 246 aa16.11■□□□□ 0.17
SHMT2-222ENST00000555774 ME3Q16798 604 aa16.11■□□□□ 0.17
SHMT2-222ENST00000555774 COPS6Q7L5N1 327 aa16.11■□□□□ 0.17
SHMT2-222ENST00000555774 MYD88Q99836 296 aa16.11■□□□□ 0.17
SHMT2-222ENST00000555774 DCCP43146 1447 aa16.11■□□□□ 0.17
SHMT2-222ENST00000555774 MEGF6O75095 1541 aa16.11■□□□□ 0.17
SHMT2-222ENST00000555774 TRHP20396 242 aaPredicted RBP16.11■□□□□ 0.17
SHMT2-222ENST00000555774 LRP10Q7Z4F1 713 aa16.11■□□□□ 0.17
SHMT2-222ENST00000555774 DCAF5Q96JK2 942 aa16.11■□□□□ 0.17
SHMT2-222ENST00000555774 NLRP2Q9NX02 1062 aa16.11■□□□□ 0.17
SHMT2-222ENST00000555774 TLR7Q9NYK1 1049 aaKnown RBP16.11■□□□□ 0.17
SHMT2-222ENST00000555774 A0A0D9SFI3 127 aa16.1■□□□□ 0.17
SHMT2-222ENST00000555774 ATP5JP18859 108 aa16.1■□□□□ 0.17
SHMT2-222ENST00000555774 ST3GAL1Q11201 340 aa16.1■□□□□ 0.17
SHMT2-222ENST00000555774 SLC39A6Q13433 755 aa16.1■□□□□ 0.17
SHMT2-222ENST00000555774 RABL6Q3YEC7 729 aaPredicted RBP16.1■□□□□ 0.17
SHMT2-222ENST00000555774 BLOC1S2Q6QNY1 142 aa16.1■□□□□ 0.17
SHMT2-222ENST00000555774 ANKRD13DQ6ZTN6 518 aa16.1■□□□□ 0.17
SHMT2-222ENST00000555774 TTC5Q8N0Z6 440 aa16.1■□□□□ 0.17
SHMT2-222ENST00000555774 BOLA2Q9H3K6 86 aa16.1■□□□□ 0.17
SHMT2-222ENST00000555774 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.1■□□□□ 0.17
SHMT2-222ENST00000555774 COL18A1P39060 1754 aa16.1■□□□□ 0.17
SHMT2-222ENST00000555774 RPS6KB1P23443 525 aa16.1■□□□□ 0.17
SHMT2-222ENST00000555774 ZC3H6P61129 1189 aaKnown RBP16.1■□□□□ 0.17
SHMT2-222ENST00000555774 KRT32Q14532 448 aa16.1■□□□□ 0.17
SHMT2-222ENST00000555774 LARP6Q9BRS8 491 aaKnown RBP16.1■□□□□ 0.17
SHMT2-222ENST00000555774 FIBPO43427 364 aa16.09■□□□□ 0.17
SHMT2-222ENST00000555774 MYL6BP14649 208 aa16.09■□□□□ 0.17
SHMT2-222ENST00000555774 RFX5P48382 616 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-222ENST00000555774 NFATC2IPQ8NCF5 419 aa16.09■□□□□ 0.17
SHMT2-222ENST00000555774 ZNF496Q96IT1 587 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-222ENST00000555774 FMNL2Q96PY5 1086 aa16.09■□□□□ 0.17
SHMT2-222ENST00000555774 SIL1Q9H173 461 aa16.09■□□□□ 0.17
SHMT2-222ENST00000555774 TPCN1Q9ULQ1 816 aa16.09■□□□□ 0.17
SHMT2-222ENST00000555774 PKD1L3Q7Z443 1732 aa16.09■□□□□ 0.17
SHMT2-222ENST00000555774 RRP9O43818 475 aaKnown RBP16.08■□□□□ 0.17
SHMT2-222ENST00000555774 USPL1Q5W0Q7 1092 aa16.08■□□□□ 0.17
SHMT2-222ENST00000555774 TICAM2Q86XR7 235 aa16.08■□□□□ 0.17
SHMT2-222ENST00000555774 ELP1O95163 1332 aa16.08■□□□□ 0.16
SHMT2-222ENST00000555774 EPHA10Q5JZY3 1008 aa16.08■□□□□ 0.16
SHMT2-222ENST00000555774 DNM1Q05193 864 aaKnown RBP16.07■□□□□ 0.16
SHMT2-222ENST00000555774 TNNI3KQ59H18 835 aa16.07■□□□□ 0.16
SHMT2-222ENST00000555774 FPGT-TNNI3KV9GXZ4 949 aa16.07■□□□□ 0.16
SHMT2-222ENST00000555774 PARP4Q9UKK3 1724 aaKnown RBP16.07■□□□□ 0.16
SHMT2-222ENST00000555774 PTPN12Q05209 780 aaKnown RBP16.07■□□□□ 0.16
SHMT2-222ENST00000555774 LARP1BQ659C4 914 aaKnown RBP16.07■□□□□ 0.16
SHMT2-222ENST00000555774 LAMB4A4D0S4 1761 aa16.06■□□□□ 0.16
SHMT2-222ENST00000555774 VPS37CA5D8V6 355 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-222ENST00000555774 TAF5LO75529 589 aa16.06■□□□□ 0.16
SHMT2-222ENST00000555774 PTMAP06454 111 aaKnown RBP16.06■□□□□ 0.16
SHMT2-222ENST00000555774 KRT85P78386 507 aa16.06■□□□□ 0.16
SHMT2-222ENST00000555774 FUCA2Q9BTY2 467 aa16.06■□□□□ 0.16
SHMT2-222ENST00000555774 DBNLQ9UJU6 430 aaKnown RBP16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms