RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-222ENST00000551425 CEMIPQ8WUJ3 1361 aa16.13■□□□□ 0.17
PTCH1-222ENST00000551425 KCNQ3O43525 872 aa16.13■□□□□ 0.17
PTCH1-222ENST00000551425 PIP4K2AP48426 406 aaPredicted RBP16.13■□□□□ 0.17
PTCH1-222ENST00000551425 AMER1Q5JTC6 1135 aaPredicted RBP16.13■□□□□ 0.17
PTCH1-222ENST00000551425 CIAPIN1Q6FI81 312 aa16.13■□□□□ 0.17
PTCH1-222ENST00000551425 TIMELESSQ9UNS1 1208 aa16.13■□□□□ 0.17
PTCH1-222ENST00000551425 BTBD11A6QL63 1104 aa16.12■□□□□ 0.17
PTCH1-222ENST00000551425 GPRC5DQ9NZD1 345 aa16.12■□□□□ 0.17
PTCH1-222ENST00000551425 PGAP2Q9UHJ9 254 aa16.12■□□□□ 0.17
PTCH1-222ENST00000551425 CASP8AP2Q9UKL3 1982 aa16.11■□□□□ 0.17
PTCH1-222ENST00000551425 FAM177BA6PVY3 158 aa16.11■□□□□ 0.17
PTCH1-222ENST00000551425 GTF2E1P29083 439 aaPredicted RBP16.11■□□□□ 0.17
PTCH1-222ENST00000551425 HOXA10P31260 410 aaPredicted RBP16.11■□□□□ 0.17
PTCH1-222ENST00000551425 NOGQ13253 232 aa16.11■□□□□ 0.17
PTCH1-222ENST00000551425 PRPF38BQ5VTL8 546 aaKnown RBP16.11■□□□□ 0.17
PTCH1-222ENST00000551425 NIM1KQ8IY84 436 aa16.11■□□□□ 0.17
PTCH1-222ENST00000551425 PRAMEF22A3QJZ6 481 aa16.1■□□□□ 0.17
PTCH1-222ENST00000551425 GLIS2Q9BZE0 524 aaPredicted RBP16.1■□□□□ 0.17
PTCH1-222ENST00000551425 NBPF26B4DH59 902 aa16.09■□□□□ 0.17
PTCH1-222ENST00000551425 SNRPA1P09661 255 aaKnown RBP16.09■□□□□ 0.17
PTCH1-222ENST00000551425 NBPF10Q6P3W6 841 aaKnown RBP16.09■□□□□ 0.17
PTCH1-222ENST00000551425 NBPF15Q8N660 670 aa16.09■□□□□ 0.17
PTCH1-222ENST00000551425 NYXQ9GZU5 481 aa16.09■□□□□ 0.17
PTCH1-222ENST00000551425 VPS33BQ9H267 617 aa16.09■□□□□ 0.17
PTCH1-222ENST00000551425 KIF7Q2M1P5 1343 aa16.09■□□□□ 0.17
PTCH1-222ENST00000551425 SOX10P56693 466 aa16.08■□□□□ 0.16
PTCH1-222ENST00000551425 EIF4G2P78344 907 aaKnown RBP eCLIP16.08■□□□□ 0.16
PTCH1-222ENST00000551425 HLFQ16534 295 aa16.08■□□□□ 0.16
PTCH1-222ENST00000551425 ZC3H15Q8WU90 426 aaKnown RBP16.08■□□□□ 0.16
PTCH1-222ENST00000551425 RPGRQ92834 1020 aaKnown RBP16.08■□□□□ 0.16
PTCH1-222ENST00000551425 ZIC5Q96T25 663 aa16.08■□□□□ 0.16
PTCH1-222ENST00000551425 ABCC12Q96J65 1359 aa16.08■□□□□ 0.16
PTCH1-222ENST00000551425 RIC1Q4ADV7 1423 aa16.08■□□□□ 0.16
PTCH1-222ENST00000551425 HSPA5P11021 654 aaKnown RBP16.07■□□□□ 0.16
PTCH1-222ENST00000551425 CRAMP1Q96RY5 1269 aa16.07■□□□□ 0.16
PTCH1-222ENST00000551425 SAGE1Q9NXZ1 904 aa16.07■□□□□ 0.16
PTCH1-222ENST00000551425 CDHR2Q9BYE9 1310 aa16.07■□□□□ 0.16
PTCH1-222ENST00000551425 NPC1L1Q9UHC9 1359 aa16.07■□□□□ 0.16
PTCH1-222ENST00000551425 PPIP5K2O43314 1243 aa16.06■□□□□ 0.16
PTCH1-222ENST00000551425 CXCL9Q07325 125 aa16.06■□□□□ 0.16
PTCH1-222ENST00000551425 CDC37L1Q7L3B6 337 aa16.06■□□□□ 0.16
PTCH1-222ENST00000551425 NUTM1Q86Y26 1132 aa16.06■□□□□ 0.16
PTCH1-222ENST00000551425 ZNRF3Q9ULT6 936 aa16.06■□□□□ 0.16
PTCH1-222ENST00000551425 PPEF1O14829 653 aaPredicted RBP16.05■□□□□ 0.16
PTCH1-222ENST00000551425 GMPSP49915 693 aaPredicted RBP16.05■□□□□ 0.16
PTCH1-222ENST00000551425 HIRAP54198 1017 aaPredicted RBP16.05■□□□□ 0.16
PTCH1-222ENST00000551425 ZNF408Q9H9D4 720 aa16.05■□□□□ 0.16
PTCH1-222ENST00000551425 COL3A1P02461 1466 aaPredicted RBP16.04■□□□□ 0.16
PTCH1-222ENST00000551425 HUNKP57058 714 aa16.04■□□□□ 0.16
PTCH1-222ENST00000551425 AOC3Q16853 763 aa16.04■□□□□ 0.16
PTCH1-222ENST00000551425 SLC51AQ86UW1 340 aa16.04■□□□□ 0.16
PTCH1-222ENST00000551425 RBM17Q96I25 401 aaKnown RBP16.04■□□□□ 0.16
PTCH1-222ENST00000551425 IBTKQ9P2D0 1353 aaPredicted RBP16.03■□□□□ 0.16
PTCH1-222ENST00000551425 FAM155AB1AL88 458 aaPredicted RBP16.03■□□□□ 0.16
PTCH1-222ENST00000551425 ERVV-1B6SEH8 477 aa16.03■□□□□ 0.16
PTCH1-222ENST00000551425 U2SURPO15042 1029 aaKnown RBP16.03■□□□□ 0.16
PTCH1-222ENST00000551425 RTFDC1Q9BY42 306 aaPredicted RBP16.03■□□□□ 0.16
PTCH1-222ENST00000551425 SUPT20HQ8NEM7 779 aa16.02■□□□□ 0.16
PTCH1-222ENST00000551425 PHACTR3Q96KR7 559 aa16.02■□□□□ 0.16
PTCH1-222ENST00000551425 TCERG1O14776 1098 aaKnown RBP16.01■□□□□ 0.15
PTCH1-222ENST00000551425 RGMBQ6NW40 437 aa16.01■□□□□ 0.15
PTCH1-222ENST00000551425 TRPM4Q8TD43 1214 aa16.01■□□□□ 0.15
PTCH1-222ENST00000551425 CCDC102AQ96A19 550 aa16.01■□□□□ 0.15
PTCH1-222ENST00000551425 TMX4Q9H1E5 349 aaPredicted RBP16.01■□□□□ 0.15
PTCH1-222ENST00000551425 ATP6V0A2Q9Y487 856 aa16.01■□□□□ 0.15
PTCH1-222ENST00000551425 TNIP1Q15025 636 aa16■□□□□ 0.15
PTCH1-222ENST00000551425 BCL2L13Q9BXK5 485 aa16■□□□□ 0.15
PTCH1-222ENST00000551425 RNF186Q9NXI6 227 aa16■□□□□ 0.15
PTCH1-222ENST00000551425 MAP3K15Q6ZN16 1313 aa15.99■□□□□ 0.15
PTCH1-222ENST00000551425 UBN2Q6ZU65 1347 aa15.99■□□□□ 0.15
PTCH1-222ENST00000551425 KIF23Q02241 960 aaPredicted RBP15.99■□□□□ 0.15
PTCH1-222ENST00000551425 SUSD4Q5VX71 490 aa15.99■□□□□ 0.15
PTCH1-222ENST00000551425 CTU1Q7Z7A3 348 aaKnown RBP15.99■□□□□ 0.15
PTCH1-222ENST00000551425 USP48Q86UV5 1035 aa15.99■□□□□ 0.15
PTCH1-222ENST00000551425 PER1O15534 1290 aaPredicted RBP15.98■□□□□ 0.15
PTCH1-222ENST00000551425 TRPA1O75762 1119 aa15.98■□□□□ 0.15
PTCH1-222ENST00000551425 RAD17O75943 681 aa15.98■□□□□ 0.15
PTCH1-222ENST00000551425 KIAA2012Q0VF49 1180 aa15.98■□□□□ 0.15
PTCH1-222ENST00000551425 C3orf67Q6ZVT6 689 aa15.98■□□□□ 0.15
PTCH1-222ENST00000551425 CNOT7Q9UIV1 285 aaKnown RBP15.98■□□□□ 0.15
PTCH1-222ENST00000551425 H7C1D1 291 aa15.97■□□□□ 0.15
PTCH1-222ENST00000551425 NTSR2O95665 410 aa15.97■□□□□ 0.15
PTCH1-222ENST00000551425 PRKAR2BP31323 418 aa15.97■□□□□ 0.15
PTCH1-222ENST00000551425 MCM10Q7L590 875 aa15.97■□□□□ 0.15
PTCH1-222ENST00000551425 C2orf69Q8N8R5 385 aa15.97■□□□□ 0.15
PTCH1-222ENST00000551425 RTF1Q92541 710 aaKnown RBP15.97■□□□□ 0.15
PTCH1-222ENST00000551425 RSPH6AQ9H0K4 717 aa15.97■□□□□ 0.15
PTCH1-222ENST00000551425 GBA2Q9HCG7 927 aaPredicted RBP15.97■□□□□ 0.15
PTCH1-222ENST00000551425 GPTP24298 496 aa15.96■□□□□ 0.15
PTCH1-222ENST00000551425 CC2D1BQ5T0F9 858 aaKnown RBP15.96■□□□□ 0.15
PTCH1-222ENST00000551425 DLK2Q6UY11 383 aa15.96■□□□□ 0.15
PTCH1-222ENST00000551425 DPP8Q6V1X1 898 aaPredicted RBP15.96■□□□□ 0.15
PTCH1-222ENST00000551425 ZNF34Q8IZ26 560 aa15.96■□□□□ 0.15
PTCH1-222ENST00000551425 GCC1Q96CN9 775 aa15.96■□□□□ 0.15
PTCH1-222ENST00000551425 NLRP3Q96P20 1036 aa15.96■□□□□ 0.15
PTCH1-222ENST00000551425 HPS5Q9UPZ3 1129 aa15.96■□□□□ 0.15
PTCH1-222ENST00000551425 SHTN1A0MZ66 631 aa15.95■□□□□ 0.14
PTCH1-222ENST00000551425 ZNF157P51786 506 aaPredicted RBP15.95■□□□□ 0.14
PTCH1-222ENST00000551425 KIF6Q6ZMV9 814 aa15.95■□□□□ 0.14
PTCH1-222ENST00000551425 TTLL7Q6ZT98 887 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms